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Outside Pubs Referencing FluoRender

Last update on 5/1/2014

NOTE: The following references turned up as hits while searching relevant terms according to a search engine, however it was not always possible to verify the validity of each reference. Anything potentially relevant was included. Please help improve the quality of this list by removing references you are able to determine are not relevant. Thanks, Erik.

2014

2013

Hidehiko K Inagaki, Yonil Jung, Eric D Hoopfer, Allan M Wong, Neeli Mishra, John Y Lin, Roger Y Tsien, David J Anderson
"Optogenetic control of Drosophila using a red-shifted channelrhodopsin reveals experience-dependent influences on courtship"
Nature Methods, 2013.
doi:10.1038/nmeth.2765
http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.2765.html

Ryo Egawa, Shoko Hososhima, Xubin Hou, Hidetaka Katow, Toru Ishizuka, Harukazu Nakamura, Hiromu Yawo.
"Optogenetic Probing and Manipulation of the Calyx-Type Presynaptic Terminal in the Embryonic Chick Ciliary Ganglion"
PLoS ONE 8(3): e59179. (2013)
doi:10.1371/journal.pone.0059179
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0059179

Mario A. Mendieta-Serrano, Denhi Schnabel, Hilda Lomelí, Enrique Salas-Vidal.
"Cell proliferation patterns in early zebrafish development"
The Anatomical Record, Apr. 2013.
DOI: 10.1002/ar.22692
http://onlinelibrary.wiley.com/doi/10.1002/ar.22692/full

Masayoshi Ito, Naoki Masuda, Kazunori Shinomiya, Keita Endo, Kei Ito.
"Systematic Analysis of Neural Projections Reveals Clonal Composition of the Drosophila Brain"
In Current Biology, Available Online Mar. 28, 2013.
DOI: 10.1016/j.cub.2013.03.015
http://www.sciencedirect.com/science/article/pii/S0960982213002819

2012

Christian Dietz, Martin Horn, Michael Berthold.
"Integrative Open-Source Software for Image Analysis in Biology", In Science Lab. Nov. 28, 2012.
http://www.leica-microsystems.com/science-lab/integrative-open-source-software-for-image-analysis-in-biology/

Ranajeet S. Saund, Masami Kanai-Azuma, Yoshiakira Kanai, Injune Kim, Mary T. Lucero, Yukio Saijoh.
"Gut endoderm is involved in the transfer of left-right asymmetry from the node to the lateral plate mesoderm in the mouse embryo"
In Development, Vol. 139, pp. 2426--2435, July 1, 2012
doi: 10.1242/dev.079921
http://dev.biologists.org/content/139/13/2426.short

Changwen Zhang, Jingxia Gao, Hefei Zhang, Liu Sun, Gang Peng.
"Robo2–Slit and Dcc–Netrin1 Coordinate Neuron Axonal Pathfinding within the Embryonic Axon Tracts"
The Journal of Neuroscience, 5 September 2012, 32(36): 12589-12602
DOI: 10.1523/JNEUROSCI.6518-11.2012
http://www.jneurosci.org/content/32/36/12589.short

Jingxia Gao, Changwen Zhang, Bin Yang, Liu Sun, Cuizhen Zhang, Monte Westerfield, Gang Peng.
"Dcc Regulates Asymmetric Outgrowth of Forebrain Neurons in Zebrafish"
PLoS ONE 7(5): e36516. 2012
DOI:10.1371/journal.pone.0036516
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0036516

Kevin W Eliceiri, Michael R Berthold, Ilya G Goldberg, Luis Ibáñez, B S Manjunath, Maryann E Martone, Robert F Murphy, Hanchuan Peng, Anne L Plant, Badrinath Roysam, Nico Stuurman, Jason R Swedlow, Pavel Tomancak, Anne E Carpenter.
"Biological imaging software tools" In Nature Methods, Vol. 9, pp. 697–710, 2012.
DOI: 10.1038/nmeth.2084
http://www.nature.com/nmeth/journal/v9/n7/abs/nmeth.2084.html

Hidehiko K. Inagaki, Shlomo Ben-Tabou de-Leon, Allan M. Wong, Smitha Jagadish, Hiroshi Ishimoto, Gilad Barnea, Toshihiro Kitamoto, Richard Axel, David J. Anderson.
"Visualizing Neuromodulation In Vivo: TANGO-Mapping of Dopamine Signaling Reveals Appetite Control of Sugar Sensing"
Cell, Volume 148, Issue 3, 3 February 2012, Pages 583–595
DOI: 10.1016/j.cell.2011.12.022
http://www.sciencedirect.com/science/article/pii/S0092867412000098

Kristen M. Kwan, Hideo Otsuna, Hinako Kidokoro, Keith R. Carney, Yukio Saijoh, Chi-Bin Chien.
"A complex choreography of cell movements shapes the vertebrate eye", In Development, Vol. 139, pp. 359--372, 2012.
DOI: 10.1242/dev.071407
http://dev.biologists.org/content/139/2/359.short

Katherine A. Zukor, David T. Kent, Shannon J. Odelberg.
"Fluorescent whole-mount method for visualizing three-dimensional relationships in intact and regenerating adult newt spinal cords", In Developmental Dynamics. Vol. 239, No. 11, pp. 3048--3057. 2010.
DOI: 10.1002/dvdy.22441
http://onlinelibrary.wiley.com/doi/10.1002/dvdy.22441/full

Paula Alexandre, Alexander M Reugels, David Barker, Eric Blanc, Jonathan D.W. Clarke.
"Neurons derive from the more apical daughter in asymmetric divisions in the zebrafish neural tube"
Nature Neuroscience, Vol. 13, pp. 673–679, 2010.
DOI: 10.1038/nn.2547
http://www.nature.com/neuro/journal/v13/n6/abs/nn.2547.html

2011

I. Caicedo, C. Avila, B. Gomez, C. Bula, C. Roa, J. Sanabria
"In-vivo x-ray micro-imaging and micro-CT with the Medipix2 semiconductor detector at UniAndes"
AIP Conf. Proc. 1423, pp. 383-386 (4 pages) 2011
doi: 10.1063/1.3688831
http://proceedings.aip.org/resource/2/apcpcs/1423/1/383_1?isAuthorized=no

I. Caicedo, C. Avila, B. Gomez, C. Bula, C. Roa, and J. Sanabria
"Biomedical imaging with the Medipix2 semiconductor detector at UniAndes"
AIP Conf. Proc. 1423, pp. 363-368 (6 pages), 2011
doi: 10.1063/1.3688827
http://proceedings.aip.org/resource/2/apcpcs/1423/1/363_1?isAuthorized=no

Masahiro Chatania, Yoshiro Takanob, Akira Kudoa.
"Osteoclasts in bone modeling, as revealed by in vivo imaging, are essential for organogenesis in fish"
Developmental Biology, Volume 360, Issue 1, 1 December 2011, Pages 96–109
DOI: 10.1016/j.ydbio.2011.09.013
http://www.sciencedirect.com/science/article/pii/S0012160611012577

Maya D. Culbertson, Zachary R. Lewis, Alexei V. Nechiporuk.
"Chondrogenic and Gliogenic Subpopulations of Neural Crest Play Distinct Roles during the Assembly of Epibranchial Ganglia"
PLoS ONE 6(9): e24443. 2011
DOI: 10.1371/journal.pone.0024443
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0024443

Amy H. Lim, Arminda Suli, Karina Yaniv, Brant Weinstein, Dean Y. Li, Chi-Bin Chien
"Motoneurons are essential for vascular pathfinding"
September 1, 2011 Development 138, 3847-3857.
doi: 10.1242/dev.068403
http://dev.biologists.org/content/138/17/3847.short

Masahiko Takemura, Takashi Adachi-Yamada.
"Cell death and selective adhesion reorganize the dorsoventral boundary for zigzag patterning of Drosophila wing margin hairs" In Developmental Biology, Volume 357, Issue 2, 15 September 2011, Pages 336–346
DOI: 10.1016/j.ydbio.2011.07.007
http://www.sciencedirect.com/science/article/pii/S0012160611011110

2010

Methods in Cell Biology, Vol. 1 - The Zebrafish: Cellular and Developmental Biology, Part A, Third Edition. 2010.
Fabienne E. Poulain, John A. Gaynes, Cornelia Stacher Horndli, Mei-Yee Law, and Chi-Bin Chien.
Ch. 1, "Analyzing Retinal Axon Guidance in Zebrafish"
http://books.google.com/books?hl=en&lr=&id=rgD7ABqAt2MC&oi=fnd&pg=PA3&dq=Fluorender&ots=LHqvqb0fwb&sig=mqTKkEaWUCWPh5gIN7mg8c0ebOE#v=onepage&q=Fluorender&f=false

Andrew J. Pittman, John A. Gaynes, Chi-Bin Chien.
"nev (cyfip2) is required for retinal lamination and axon guidance in the zebrafish retinotectal system"
Developmental Biology, Volume 344, Issue 2, 15 August 2010, Pages 784–794
DOI: 10.1016/j.ydbio.2010.05.512
http://www.sciencedirect.com/science/article/pii/S0012160610008158

Rainer W., Gilad A. Jacobson, Peixin Zhu.
"Circuit Neuroscience in Zebrafish"
In Current Biology, Volume 20, Issue 8, 27 April 2010, Pages R371–R381
http://www.sciencedirect.com/science/article/pii/S0960982210002277

Unknown Year or Publication Status

(Chinese reference)
http://www.chinagene.cn/Jwk_yc/EN/article/downloadArticleFile.do?attachType=PDF&id=21028