Web Content Display Web Content Display

Outside Pubs Referencing FluoRender

Last update on 5/1/2014

NOTE: The following references turned up as hits while searching relevant terms according to a search engine, however it was not always possible to verify the validity of each reference. Anything potentially relevant was included. Please help improve the quality of this list by removing references you are able to determine are not relevant. Thanks, Erik.



Hidehiko K Inagaki, Yonil Jung, Eric D Hoopfer, Allan M Wong, Neeli Mishra, John Y Lin, Roger Y Tsien, David J Anderson
"Optogenetic control of Drosophila using a red-shifted channelrhodopsin reveals experience-dependent influences on courtship"
Nature Methods, 2013.

Ryo Egawa, Shoko Hososhima, Xubin Hou, Hidetaka Katow, Toru Ishizuka, Harukazu Nakamura, Hiromu Yawo.
"Optogenetic Probing and Manipulation of the Calyx-Type Presynaptic Terminal in the Embryonic Chick Ciliary Ganglion"
PLoS ONE 8(3): e59179. (2013)

Mario A. Mendieta-Serrano, Denhi Schnabel, Hilda Lomelí, Enrique Salas-Vidal.
"Cell proliferation patterns in early zebrafish development"
The Anatomical Record, Apr. 2013.
DOI: 10.1002/ar.22692

Masayoshi Ito, Naoki Masuda, Kazunori Shinomiya, Keita Endo, Kei Ito.
"Systematic Analysis of Neural Projections Reveals Clonal Composition of the Drosophila Brain"
In Current Biology, Available Online Mar. 28, 2013.
DOI: 10.1016/j.cub.2013.03.015


Christian Dietz, Martin Horn, Michael Berthold.
"Integrative Open-Source Software for Image Analysis in Biology", In Science Lab. Nov. 28, 2012.

Ranajeet S. Saund, Masami Kanai-Azuma, Yoshiakira Kanai, Injune Kim, Mary T. Lucero, Yukio Saijoh.
"Gut endoderm is involved in the transfer of left-right asymmetry from the node to the lateral plate mesoderm in the mouse embryo"
In Development, Vol. 139, pp. 2426--2435, July 1, 2012
doi: 10.1242/dev.079921

Changwen Zhang, Jingxia Gao, Hefei Zhang, Liu Sun, Gang Peng.
"Robo2–Slit and Dcc–Netrin1 Coordinate Neuron Axonal Pathfinding within the Embryonic Axon Tracts"
The Journal of Neuroscience, 5 September 2012, 32(36): 12589-12602
DOI: 10.1523/JNEUROSCI.6518-11.2012

Jingxia Gao, Changwen Zhang, Bin Yang, Liu Sun, Cuizhen Zhang, Monte Westerfield, Gang Peng.
"Dcc Regulates Asymmetric Outgrowth of Forebrain Neurons in Zebrafish"
PLoS ONE 7(5): e36516. 2012

Kevin W Eliceiri, Michael R Berthold, Ilya G Goldberg, Luis Ibáñez, B S Manjunath, Maryann E Martone, Robert F Murphy, Hanchuan Peng, Anne L Plant, Badrinath Roysam, Nico Stuurman, Jason R Swedlow, Pavel Tomancak, Anne E Carpenter.
"Biological imaging software tools" In Nature Methods, Vol. 9, pp. 697–710, 2012.
DOI: 10.1038/nmeth.2084

Hidehiko K. Inagaki, Shlomo Ben-Tabou de-Leon, Allan M. Wong, Smitha Jagadish, Hiroshi Ishimoto, Gilad Barnea, Toshihiro Kitamoto, Richard Axel, David J. Anderson.
"Visualizing Neuromodulation In Vivo: TANGO-Mapping of Dopamine Signaling Reveals Appetite Control of Sugar Sensing"
Cell, Volume 148, Issue 3, 3 February 2012, Pages 583–595
DOI: 10.1016/j.cell.2011.12.022

Kristen M. Kwan, Hideo Otsuna, Hinako Kidokoro, Keith R. Carney, Yukio Saijoh, Chi-Bin Chien.
"A complex choreography of cell movements shapes the vertebrate eye", In Development, Vol. 139, pp. 359--372, 2012.
DOI: 10.1242/dev.071407

Katherine A. Zukor, David T. Kent, Shannon J. Odelberg.
"Fluorescent whole-mount method for visualizing three-dimensional relationships in intact and regenerating adult newt spinal cords", In Developmental Dynamics. Vol. 239, No. 11, pp. 3048--3057. 2010.
DOI: 10.1002/dvdy.22441

Paula Alexandre, Alexander M Reugels, David Barker, Eric Blanc, Jonathan D.W. Clarke.
"Neurons derive from the more apical daughter in asymmetric divisions in the zebrafish neural tube"
Nature Neuroscience, Vol. 13, pp. 673–679, 2010.
DOI: 10.1038/nn.2547


I. Caicedo, C. Avila, B. Gomez, C. Bula, C. Roa, J. Sanabria
"In-vivo x-ray micro-imaging and micro-CT with the Medipix2 semiconductor detector at UniAndes"
AIP Conf. Proc. 1423, pp. 383-386 (4 pages) 2011
doi: 10.1063/1.3688831

I. Caicedo, C. Avila, B. Gomez, C. Bula, C. Roa, and J. Sanabria
"Biomedical imaging with the Medipix2 semiconductor detector at UniAndes"
AIP Conf. Proc. 1423, pp. 363-368 (6 pages), 2011
doi: 10.1063/1.3688827

Masahiro Chatania, Yoshiro Takanob, Akira Kudoa.
"Osteoclasts in bone modeling, as revealed by in vivo imaging, are essential for organogenesis in fish"
Developmental Biology, Volume 360, Issue 1, 1 December 2011, Pages 96–109
DOI: 10.1016/j.ydbio.2011.09.013

Maya D. Culbertson, Zachary R. Lewis, Alexei V. Nechiporuk.
"Chondrogenic and Gliogenic Subpopulations of Neural Crest Play Distinct Roles during the Assembly of Epibranchial Ganglia"
PLoS ONE 6(9): e24443. 2011
DOI: 10.1371/journal.pone.0024443

Amy H. Lim, Arminda Suli, Karina Yaniv, Brant Weinstein, Dean Y. Li, Chi-Bin Chien
"Motoneurons are essential for vascular pathfinding"
September 1, 2011 Development 138, 3847-3857.
doi: 10.1242/dev.068403

Masahiko Takemura, Takashi Adachi-Yamada.
"Cell death and selective adhesion reorganize the dorsoventral boundary for zigzag patterning of Drosophila wing margin hairs" In Developmental Biology, Volume 357, Issue 2, 15 September 2011, Pages 336–346
DOI: 10.1016/j.ydbio.2011.07.007


Methods in Cell Biology, Vol. 1 - The Zebrafish: Cellular and Developmental Biology, Part A, Third Edition. 2010.
Fabienne E. Poulain, John A. Gaynes, Cornelia Stacher Horndli, Mei-Yee Law, and Chi-Bin Chien.
Ch. 1, "Analyzing Retinal Axon Guidance in Zebrafish"

Andrew J. Pittman, John A. Gaynes, Chi-Bin Chien.
"nev (cyfip2) is required for retinal lamination and axon guidance in the zebrafish retinotectal system"
Developmental Biology, Volume 344, Issue 2, 15 August 2010, Pages 784–794
DOI: 10.1016/j.ydbio.2010.05.512

Rainer W., Gilad A. Jacobson, Peixin Zhu.
"Circuit Neuroscience in Zebrafish"
In Current Biology, Volume 20, Issue 8, 27 April 2010, Pages R371–R381

Unknown Year or Publication Status

(Chinese reference)