Outside Pubs Referencing Seg3D

Last update on 8/16/2021

This page contains citations of publications that did not include NRBC personnel but referred to the Seg3D software.

2022

Jingyun Chen, Louisa Bokacheva, and Henry Rusinek. Image segmentation and nonuniformity correction methods. In 3D Printing for the Radiologist, pages 31–43. Elsevier, 2022.

 

2021

Ahmed H Aly, Yoshiaki Saito, Wobbe Bouma, James J Pilla, Alison M Pouch, Paul A Yushkevich, Matthew J Gillespie, Joseph H Gorman III, and Robert C Gorman. Multimodal image analysis and subvalvular dynamics in ischemic mitral regurgitation. JTCVS Open, 5:48–60, 2021.

Thomas L Athey, Can Ceritoglu, Daniel J Tward, Kwame S Kutten, J Raymond DePaulo, Kara Glazer, Fernando S Goes, John R Kelsoe, Francis Mondimore, Caroline M Nievergelt, et al. A 7 tesla amygdalar-hippocampal shape analysis of lithium response in bipolar disorder. Frontiers in Psychiatry, 12:99, 2021.

Stephen Bader and Jonathan Carpenter. Design of a more stable phantom for combined nir and x-ray imaging. 2021.

Yogesh Deepak Bansod, Maeruan Kebbach, Daniel Kluess, Rainer Bader, and Ursula van Rienen. Finite element analysis of bone remodelling with piezoelectric effects using an open-source framework. Biomechanics and Modeling in Mechanobiology, pages 1–20, 2021.

Abhisek Bhattarai, Janne TA Mäkelä, Behdad Pouran, Heikki Kröger, Harrie Weinans, Mark W Grinstaff, Juha Töyräs, and Mikael J Turunen. Effects of human articular cartilage constituents on simultaneous diffusion of cationic and nonionic contrast agents. Journal of Orthopaedic Research®, 39(4):771–779, 2021.

Fernando O Campos, Michele Orini, Robert Arnold, John Whitaker, Mark O’Neill, Reza Razavi, Gernot Plank, Ben Hanson, Bradley Porter, Christopher Aldo Rinaldi, et al. Assessing the ability of substrate mapping techniques to guide ventricular tachycardia ablation using computational modelling. Computers in Biology and Medicine, 130:104214, 2021.

James Castiglione, Elanchezhian Somasundaram, Leah A Gilligan, Andrew T Trout, and Samuel Brady. Automated segmentation of abdominal skeletal muscle in pediatric ct scans using deep learning. Radiology: Artificial Intelligence, page e200130, 2021.

Chloe G Cross, Allison H Payne, Gregory W Hawryluk, Riley Haag-Roeger, Rahul Cheeniyil, Dalton Brady, Henrik Odéen, Satoshi Minoshima, Donna J Cross, and Yoshimi Anzai. Quantification of blood spinal cord barrier permeability after application of magnetic resonance guided focused ultrasound in spinal cord injury. Medical Physics, 2021.

L de Campos Fruchi, MP Alcalde, PA Amoroso-Silva, RR Vivan, CM Bramante, and MAH Duarte. Microtomography evaluation of the efficacy of reciprocating and rotary instruments followed by different complementary steps in the retreatment of curved root canals. J Dent Oral Sci, 3(2):1–13, 2021.

Oliver Diaz, Kaisar Kushibar, Richard Osuala, Akis Linardos, Lidia Garrucho, Laura Igual, Petia Radeva, Fred Prior, Polyxeni Gkontra, and Karim Lekadir. Data preparation for artificial intelligence in medical imaging: a comprehensive guide to open-access platforms and tools. Physica Medica, 83:25–37, 2021.

Marissa D’Alonzo, Alican Bozkurt, Christi Alessi-Fox, Melissa Gill, Dana H Brooks, Milind Rajadhyaksha, Kivanc Kose, and Jennifer G Dy. Semantic segmentation of reflectance confocal microscopy mosaics of pigmented lesions using weak labels. Scientific Reports, 11(1):1–13, 2021.

Richard T Epperson, Dustin L Williams, Brady Rogers, John Maxwell, and Peter Stevens. Assessing the safety of an epiphyseal plate biopsy in a translational lamb model. Journal of Orthopaedic Research®, 2021.

Pier francesco Fabbri, Piero A Salvadori, and Stefano Benazzi. Middle paleolithic human deciduous incisor from grotta del cavallo, italy. 2021.

Ramtin Gharleghi, Claire A Dessalles, Ronil Lal, Sinead McCraith, Kiran Sarathy, Nigel Jepson, James Otton, Abdul I Barakat, and Susann Beier. 3d printing for cardiovascular applications: From end-to-end processes to emerging developments. Annals of Biomedical Engineering, pages 1–21, 2021.

Karli Gillette, Matthias AF Gsell, Anton J Prassl, Elias Karabelas, Ursula Reiter, Gert Reiter, Thomas Grandits, Christian Payer, Darko Štern, Martin Urschler, et al. A framework for the generation of digital twins of cardiac electrophysiology from clinical 12-leads ecgs. Medical Image Analysis, 71:102080, 2021.

Tomás González González. Estudio mediante simulación de la generación de arritmias reentrantes en distintos estadios tras un infarto de miocardio. 2021.

Elia A Guzzi, Héloïse Ragelle, and Mark W Tibbitt. Surface tension-assisted additive manufacturing of tubular, multicomponent biomaterials. In Computer-Aided Tissue Engineering, pages 149–160. Humana, New York, NY, 2021.

Mahesh Kappanayil. 3d prototyping: Technology and applications for chd. In CT and MRI in Congenital Heart Diseases, pages 569–581. Springer, 2021.

Gurman Kaur, Caroline BM Porter, Orr Ashenberg, Jack Lee, Samantha J Riesenfeld, Matan Hofree, Maria Aggelakopoulou, Ayshwarya Subramanian, Subita Balaram Kuttikkatte, Kathrine E Attfield, et al. Parental-fetal interplay of immune genes leads to intrauterine growth restriction. bioRxiv, 2021.

Lisa Köhler, Ellen Schulz-Kornas, Ingrid Vervuert, Claudia Gittel, Karsten Winter, Dagmar Berner, and Kerstin Gerlach. Volumetric measurements of paranasal sinuses and examination of sinonasal communication in healthy shetland ponies: anatomical and morphometric characteristics using computed tomography. BMC Veterinary Research, 17(1):1–8, 2021.

Kivanc Kose, Alican Bozkurt, Christi Alessi-Fox, Melissa Gill, Caterina Longo, Giovanni Pellacani, Jennifer G Dy, Dana H Brooks, and Milind Rajadhyaksha. Segmentation of cellular patterns in confocal images of melanocytic lesions in vivo via a multiscale encoder-decoder network (med-net). Medical Image Analysis, 67:101841, 2021.

Bianca Le, Pedro Ferreira, Samer Merchant, Gang Zheng, Megan R Sutherland, Mar Janna Dahl, Kurt H Albertine, and Mary Jane Black. Microarchitecture of the hearts in term and former-preterm lambs using diffusion tensor imaging. The Anatomical Record, 304(4):803–817, 2021.

Yan Liang, Robert C Lyon, Jason Pellman, William H Bradford, Stephan Lange, Julius Bogomolovas, Nancy D Dalton, Yusu Gu, Marcus Bobar, Mong-Hong Lee, et al. Desmosomal cop9 regulates proteome degradation in arrhythmogenic right ventricular dysplasia/cardiomyopathy. The Journal of Clinical Investigation, 2021.

Eva Milara Hernando. Diseño y desarrollo de modelos personalizados multiescala de corazón completo para el estudio de la actividad eléctrica cardiaca. 2021.

Maja Musse, Ghina Hajjar, Nusrat Ali, Bastien Billiot, Gisèle Joly, Jérémy Pépin, Stéphane Quellec, Sylvain Challois, François Mariette, Mireille Cambert, et al. A global non-invasive methodology for the phenotyping of potato under water deficit conditions using imaging, physiological and molecular tools. 2021.

Maria Carla Piastra, Andreas Nüßing, Johannes Vorwerk, Maureen Clerc, Christian Engwer, and Carsten H Wolters. A comprehensive study on electroencephalography and magnetoencephalography sensitivity to cortical and subcortical sources. Human Brain Mapping, 42(4):978–992, 2021.

Ivo Planinc, Patricia Garcia-Canadilla, Hector Dejea, Ivana Ilic, Eduard Guasch, Monica Zamora, Fatima Crispi, Marco Stampanoni, Davor Milicic, Bart Bijnens, et al. Myocardial remodeling in ischemic heart disease–imaging from cell to organ level by synchrotron propagation based x-ray phase-contrast imaging. 2021.

María Puente Alonso. Desarrollo de modelos ventriculares personalizados multiescala para pacientes pediátricos con arritmias ventriculares. 2021.

Cristobal Rodero, Marina Strocchi, Maciej Marciniak, Stefano Longobardi, John Whitaker, Mark D O’Neill, Karli Gillette, Christoph Augustin, Gernot Plank, Edward J Vigmond, et al. Linking statistical shape models and simulated function in the healthy adult human heart. PLoS computational biology, 17(4):e1008851, 2021.

João Salinet, Rubén Molero, Fernando S Schlindwein, Joël Karel, Miguel Rodrigo, José Luis Rojo-Álvarez, Omer Berenfeld, Andreu M Climent, Brian Zenger, Frederique Vanheusden, et al. Electrocardiographic imaging for atrial fibrillation: a perspective from computer models and animal experiments to clinical value. Frontiers in physiology, 12, 2021.

Stephen Sammut, Ryan GL Koh, and José Zariffa. Compensation strategies for bioelectric signal changes in chronic selective nerve cuff recordings: A simulation study. Sensors, 21(2):506, 2021.

Deanna CE Sinex, Shaniel T Bowen, Ahmed Kashkoush, Arianna Rosemond, Danielle Carter, Prahlad G Menon, Pamela A Moalli, and Steven D Abramowitch. The establishment of a 3d anatomical coordinate system for defining vaginal axis and spatial position. Computer Methods and Programs in Biomedicine, page 106175, 2021.

Carmen Solanes, Jose L Durá, M Ángeles Canós, Jose De Andrés, Luis Martí-Bonmatí, and Javier Saiz. 3d patient-specific spinal cord computational model for scs management: potential clinical applications. Journal of Neural Engineering, 18(3):036017, 2021.

Teneale A Stewart, Katherine Hughes, Alexander J Stevenson, Natascia Marino, Adler L Ju, Michael Morehead, and Felicity M Davis. Mammary mechanobiology–investigating roles for mechanically activated ion channels in lactation and involution. Journal of cell science, 134(1):jcs248849, 2021.

Gaia Amaranta Taberna, Jessica Samogin, and Dante Mantini. Automated head tissue modelling based on structural magnetic resonance images for electroencephalographic source reconstruction. Neuroinformatics, pages 1–12, 2021.

Galina Yankova, Darya Tur, Daniil Parshin, Alexander Cherevko, and Andrey Akulov. Cerebral arterial architectonics and cfd simulation in mice with type 1 diabetes mellitus of different duration. Scientific reports, 11(1):1–9, 2021.

Stefano Zappalà, Nicholas J Bennion, Matthew R Potts, Jing Wu, Slawomir Kusmia, Derek K Jones, Sam L Evans, and David Marshall. Full-field mri measurements of in-vivo positional brain shift reveal the significance of intra-cranial geometry and head orientation for stereotactic surgery. 2021.

 

2020

Trevor G Aguirre, Luca Fuller, Aniket Ingrole, Tim W Seek, Benjamin B Wheatley, Brett D Steineman, Tammy L Haut Donahue, and Seth W Donahue. Bioinspired material architectures from bighorn sheep horncore velar bone for impact loading applications. Scientific Reports, 10(1):1–14, 2020.

Trevor G Aguirre, Aniket Ingrole, Luca Fuller, Tim W Seek, Anthony R Fiorillo, Joseph JW Sertich, and Seth W Donahue. Differing trabecular bone architecture in dinosaurs and mammals contribute to stiffness and limits on bone strain. Plos one, 15(8):e0237042, 2020.

Trevor Gabriel Aguirre. Bio-inspired design for engineering applications: empirical and finite element studies of biomechanically adapted porous bone architectures. PhD thesis, Colorado State University, 2020.

Natasha Alves, Angela Kim, Jeremy Tan, Germain Hwang, Talha Javed, Bogdan Neagu, and Brian K Courtney. Cardiac tissue-mimicking ballistic gel phantom for ultrasound imaging in clinical and research applications. Ultrasound in Medicine & Biology, 46(8):2057–2069, 2020.

Christoph M Augustin, Matthias AF Gsell, Elias Karabelas, Erik Willemen, Frits Prinzen, Joost Lumens, Edward J Vigmond, and Gernot Plank. Validation of a 3d-0d closed-loop model of the heart and circulation–modeling the experimental assessment of diastolic and systolic ventricular properties. arXiv preprint arXiv:2009.08802, 2020.

Dalenda Bouzidi, Fahmi Ghozzi, Khaled Taouil, and Ahmed Fakhfakh. Brainseg3d to detect multiple sclerosis lesions using magnetic resonance imaging. In 2020 IEEE International Conference on Design & Test of Integrated Micro & Nano-Systems (DTS), pages 1–6. IEEE, 2020.

Ana Bucchi, Thomas A PÜSCHEL, Carlos Lorenzo, and Jordi Marce-Nogue. Finite element analysis of the proximal phalanx of the thumb in hominoidea during simulated stone tool use. Comptes Rendus Palevol, 19(2):26–39, 2020.

Mark Andrew Campbell. Improving Electrical Impedance Tomography Imaging of the Brain. PhD thesis, Carleton University, 2020.

Eric D Carruth, Irvin Teh, Jurgen E Schneider, Andrew D McCulloch, Jeffrey H Omens, and Lawrence R Frank. Regional variations in ex-vivo diffusion tensor anisotropy are associated with cardiomyocyte remodeling in rats after left ventricular pressure overload. Journal of Cardiovascular Magnetic Resonance, 22:1–13, 2020.

Luís Eduardo Ramos de Carvalho et al. Desenvolvimento de métodos computacionais em volumes: segmentação de estruturas orgânicas em rochas. 2020.

Caroline Mendonca Costa, Caroline Roney, Marina Strocchi, Orod Razeghi, and Steven Niederer. Clinical translation of patient-specific organ level cardiac models. Modeling and Simulating Cardiac Electrical Activity, Ch. 8, pp.8-1 to 8-19, 2020.

Timothy C Cox. Microcomputed tomography of craniofacial mineralized tissue: A practical user’s guide to study planning and generating quality data. Bone, page 115408, 2020.

Shu Deng, Yang Hu, Jing Zhou, Yufeng Wang, Yuguang Wang, Sicong Li, Grace Huang, Cheng Peng, Anka Hu, Qing Yu, et al. Tlr4 mediates alveolar bone resorption in experimental peri-implantitis through regulation of cd45+ cell infiltration, rankl/opg ratio, and inflammatory cytokine production. Journal of periodontology, 91(5):671–682, 2020.

S Bryn Dhir, Kwame S Kutten, Muwei Li, Andreia V Faria, Laurent Younes, and J Tilak Ratnanather. Visualising the topography of the acoustic radiation in clinical diffusion tensor imaging scans. Neuroradiology, 62(9):1157–1167, 2020.

Thomas Dowrick, James Avery, Mayo Faulkner, David Holder, and Kirill Aristovich. Eit-mesher–segmented fem mesh generation and refinement. Journal of Open Research Software, 8(1), 2020.

Joao Filipe Fernandes, Yohan Noh, Sergio Uribe, Jesus Urbina, Julio Sotelo, Ronak Rajani, Pablo Lamata, and Kawal Rhode. Manufacturing of ultrasound-and mri-compatible aortic valves using 3d printing for analysis and simulation. In Statistical Atlases and Computational Models of the Heart. MultiSequence CMR Segmentation, CRT-EPiggy and LV Full Quantification Challenges: 10th International Workshop, STACOM 2019, Held in Conjunction with MICCAI 2019, Shenzhen, China, October 13, 2019, Revised Selected Papers, volume 12009, page 12. Springer Nature, 2020.

Enrico Ferrari, Michele Gallo, Changtian Wang, Lei Zhang, Maurizio Taramasso, Francesco Maisano, Luigi Pirelli, Denis Berdajs, and Ludwig Karl von Segesser. Three-dimensional printing in adult cardiovascular medicine for surgical and transcatheter procedural planning, teaching and technological innovation. Interactive cardiovascular and thoracic surgery, 30(2):203–214, 2020.

Lance Frazer, Daniel P Nicolella, and Andrew Tonge. Human response to high rate loading. Technical report, Southwest Research Institute San Antonio United States, 2020.

Philip M Gemmell, Karli Gillette, Gabriel Balaban, Ronak Rajani, Edward J Vigmond, Gernot Plank, and Martin J Bishop. A computational investigation into rate-dependant vectorcardiogram changes due to specific fibrosis patterns in non-ischæmic dilated cardiomyopathy. Computers in biology and medicine, 123:103895, 2020.

Debao Guan, Jiang Yao, Xiaoyu Luo, and Hao Gao. Effect of myofibre architecture on ventricular pump function by using a neonatal porcine heart model: from dt-mri to rule-based methods. Royal Society Open Science, 7(4):191655, 2020.

Yeisson Gutiérrez, David Ott, and Christoph Scherber. Direct and indirect effects of plant diversity and phenoxy herbicide application on the development and reproduction of a polyphagous herbivore. Scientific reports, 10(1):1–11, 2020.

Marion Hoffmann, Mickaël Begon, Yoann Lafon, and Sonia Duprey. Influence of glenohumeral joint muscle insertion on moment arms using a finite element model. Computer Methods in Biomechanics and Biomedical Engineering, 23(14):1117–1126, 2020.

Miitu KM Honkanen, Annina EA Saukko, Mikael J Turunen, Rubina Shaikh, Mithilesh Prakash, Goran Lovric, Antti Joukainen, Heikki Kröger, Mark W Grinstaff, and Juha Töyräs. Synchrotron microct reveals the potential of the dual contrast technique for quantitative assessment of human articular cartilage composition. Journal of Orthopaedic Research®, 38(3):563–573, 2020.

Miitu KM Honkanen, Annina EA Saukko, Mikael J Turunen, Wujun Xu, Goran Lovric, Juuso TJ Honkanen, Mark W Grinstaff, Vesa-Pekka Lehto, and Juha Töyräs. Triple contrast ct method enables simultaneous evaluation of articular cartilage composition and segmentation. Annals of biomedical engineering, 48(2):556–567, 2020.

Yu-chi Hu. A semi-automated approach to medical image segmentation using conditional random field inference. 2020.

Takashi Kamio, Madoka Suzuki, Rieko Asaumi, and Taisuke Kawai. Dicom segmentation and stl creation for 3d printing: a process and software package comparison for osseous anatomy. 3D Printing in Medicine, 6(1):1–12, 2020.

Burcu Kepsutlu, Virginia Wycisk, Katharina Achazi, Sergey Kapishnikov, Ana Joaquina Pérez-Berná, Peter Guttmann, Antje Cossmer, Eva Pereiro, Helge Ewers, Matthias Ballauff, et al. Cells undergo major changes in the quantity of cytoplasmic organelles after uptake of gold nanoparticles with biologically relevant surface coatings. ACS nano, 14(2):2248–2264, 2020.

Georgios Kissas, Yibo Yang, Eileen Hwuang, Walter R Witschey, John A Detre, and Paris Perdikaris. Machine learning in cardiovascular flows modeling: Predicting arterial blood pressure from noninvasive 4d flow mri data using physics-informed neural networks. Computer Methods in Applied Mechanics and Engineering, 358:112623, 2020.

Theodora Kontodina, Dimitrios Tzetzis, J Paulo Davim, and Panagiotis Kyratsis. 5 additive manufacturing for patient-specific medical use. Additive and Subtractive Manufacturing: Emergent Technologies, 4:199, 2020.

Seungbum Koo, Cong-Bo Phan, and Kyoung Min Lee. Evaluation of different hindfoot kinematics according to various shoe-types during walking using bi-planar fluoroscopy. In 2020 Annual Meeting of Orthopaedic Research Society. Orthopaedic Research Society, 2020.

Kivanc Kose, Alican Bozkurt, Christi Alessi-Fox, Dana H Brooks, Jennifer G Dy, Milind Rajadhyaksha, and Melissa Gill. Utilizing machine learning for image quality assessment for reflectance confocal microscopy. Journal of Investigative Dermatology, 140(6):1214–1222, 2020.

Mayank D Kothari, Kaitlin G Rabe, Donald D Anderson, Michael C Nevitt, John A Lynch, Hayden Franz, Neil A. Segal, and Multicenter Osteoarthritis Study Group. The relationship of three-dimensional joint space width on weight-bearing ct with pain and physical function. Journal of Orthopaedic Research®, 38(6):1333–1339, 2020.

Aleksey G Kuchumov, Marat R Kamaltdinov, Vladimir A Samartsev, Aleksander R Khairulin, Yulia A Ivashova, and Redha Taiar. Patient-specific simulation of a gallbladder refilling based on mri and ultrasound in vivo measurements. In AIP Conference Proceedings, volume 2216, page 060004. AIP Publishing LLC, 2020.

Sue Kulason, Eileen Xu, Daniel J Tward, Arnold Bakker, Marilyn Albert, Laurent Younes, and Michael I Miller. Entorhinal and transentorhinal atrophy in preclinical alzheimer’s disease. Frontiers in Neuroscience, 14, 2020.

Yoon Kwak, Jeongwon Kim, Kyoung Min Lee, and Seungbum Koo. Increase of stiffness in plantar fat tissue in diabetic patients. Journal of Biomechanics, 107:109857, 2020.

Sophie Le Cann, Elin Törnquist, Isabella Silva Barreto, Manon Fraulob, Hugues Albini Lomami, Mariana Verezhak, Manuel Guizar-Sicairos, Hanna Isaksson, and Guillaume Haiat. Spatio-temporal evolution of hydroxyapatite crystal thickness at the bone-implant interface. Acta Biomaterialia, 116:391–399, 2020.

Dongheon Lee, Hyoun-Joong Kong, June Young Choi, and Young Jun Chai. Application of augmented reality for recurrent laryngeal nerve identification during robotic thyroid surgery. VideoEndocrinology, 7(4), 2020.

Dongheon Lee, Hyeong Won Yu, Seunglee Kim, Jin Yoon, Keunchul Lee, Young Jun Chai, June Young Choi, Hyoun-Joong Kong, Kyu Eun Lee, Hwan Seong Cho, et al. Vision-based tracking system for augmented reality to localize recurrent laryngeal nerve during robotic thyroid surgery. Scientific reports, 10(1):1–7, 2020.

Jose Novo Matos, Patricia Garcia-Canadilla, Ian C Simcock, J Ciaran Hutchinson, Melanie Dobromylskyj, Anna Guy, Owen J Arthurs, Andrew C Cook, and Virginia Luis Fuentes. Micro-computed tomography (micro-ct) for the assessment of myocardial disarray, fibrosis and ventricular mass in a feline model of hypertrophic cardiomyopathy. Scientific reports, 10(1):1–14, 2020.

Carlos Mira, Ernesto Moya-Albor, Boris Escalante-Ramirez, Jimena Olveres, Jorge Brieva, and Enrique Vallejo. 3d hermite transform optical flow estimation in left ventricle ct sequences. Sensors, 20(3):595, 2020.

Fariba Mohammadi, Shusil Dangi, Suzanne M Shontz, and Cristian A Linte. A direct high-order curvilinear triangular mesh generation method using an advancing front technique. In International Conference on Computational Science, pages 72–85. Springer, 2020.

Sofia Monaci, Marina Strocchi, Cristobal Rodero, Karli Gillette, John Whitaker, Ronak Rajani, Christopher A Rinaldi, Mark O’Neill, Gernot Plank, Andrew King, et al. In-silico pace-mapping using a detailed whole torso model and implanted electronic device electrograms for more efficient ablation planning. Computers in Biology and Medicine, 125:104005, 2020.

Stefania Moscato, Manuela Cabiati, Francesco Bianchi, Daniele Panetta, Silvia Burchielli, Gabriele Massimetti, Silvia Del Ry, and Letizia Mattii. Heart and liver connexin expression related to the first stage of aging: A study on naturally aged animals. Acta Histochemica, 122(8):151651, 2020.

Katariina AH Myller, Rami K Korhonen, Juha Töyräs, Petri Tanska, Sami P Väänänen, Jukka S Jurvelin, Simo Saarakkala, and Mika E Mononen. Clinical contrast-enhanced computed tomography with semiautomatic segmentation provides feasible input for computational models of the knee joint. Journal of biomechanical engineering, 142(5), 2020.

Gustavo A Orozco, Paul Bolcos, Ali Mohammadi, Matthew S Tanaka, Mingrui Yang, Thomas M Link, Benjamin Ma, Xiaojuan Li, Petri Tanska, and Rami K Korhonen. Prediction of local fixed charge density loss in cartilage following acl injury and reconstruction: A computational proof-of-concept study with mri follow-up. Journal of Orthopaedic Research®, 2020.

Giovani Antonio Ortigara, Maíra Prado, Ricardo Tadeu Lopes, Bernardo Camargo dos Santos, Heloisa Gusman, et al. Micro-computed tomographic evaluation of smear layer and accumulated hard tissue debris removal. Journal of Conservative Dentistry, 23(3):249, 2020.

Keqing Pan, Yang Hu, Yufeng Wang, Hao Li, Michele Patel, Danyang Wang, Zuomin Wang, and Xiaozhe Han. Rankl blockade alleviates peri-implant bone loss and is enhanced by anti-inflammatory microrna-146a through tlr2/4 signaling. International journal of implant dentistry, 6:1–11, 2020.

Lujie Peng and Shu Wang. Anatomical kidney model fabrication for ultrasound simulation using direct 3d printing. In IOP Conference Series: Materials Science and Engineering, volume 809, page 012022. IOP Publishing, 2020.

Sene K Polamalu, Volker Musahl, and Richard E Debski. Tibiofemoral bony morphology features associated with acl injury and sex utilizing a 3-dimensional statistical shape modeling. Journal of Orthopaedic Research®, 2020.

Thomas A Püschel, Jordi Marcé-Nogué, Andrew T Chamberlain, Alaster Yoxall, and William I Sellers. The biomechanical importance of the scaphoid-centrale fusion during simulated knuckle-walking and its implications for human locomotor evolution. Scientific reports, 10(1):1–7, 2020.

Deepak Bushan Raina, Alexandra Glencross, Nadia Chaher, Yang Liu, Lars Lidgren, Hanna Isaksson, and Magnus Tägil. Synthesis and characterization of a biocomposite bone bandage for controlled delivery of bone-active drugs in fracture nonunions. ACS Biomaterials Science & Engineering, 6(5):2867–2878, 2020.

Enrico Ravagli, Svetlana Mastitskaya, Nicole Thompson, Francesco Iacoviello, Paul R Shearing, Justin Perkins, Alexander V Gourine, Kirill Aristovich, and David Holder. Imaging fascicular organization of rat sciatic nerves with fast neural electrical impedance tomography. Nature communications, 11(1):1–10, 2020.

Sofia Rokkones and Karin Odin. The effect of vessel holes on fracture behaviour in the femoral neck of the human femur. 2020.

Ghazaleh Rostaminia, Steven Abramowitch, Cecilia Chang, and Roger P Goldberg. Descent and hypermobility of the rectum in women with obstructed defecation symptoms. International urogynecology journal, 31(2):337–349, 2020.

Stephen Sammut. Compensation for Bioelectric Signal Changes in Chronic Selective Nerve Cuff Recordings: A Simulation Study. PhD thesis, 2020.

Stephen Sammut, Ryan GL Koh, and José Zariffa. Impact of encapsulation tissue growth on selective recording in nerve cuff electrodes: A simulation study. In 2020 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), pages 3444–3447. IEEE, 2020.

Todd A Schoborg. Whole animal imaging of drosophila melanogaster using microcomputed tomography. JoVE (Journal of Visualized Experiments), (163):e61515, 2020.

Brett L Seeley-Hacker, Eric P Holmgren, Christopher W Harper, Caroline S Lauer, and Douglas W Van Citters. An anatomic predisposition to mandibular angle fractures. Journal of Oral and Maxillofacial Surgery, 78(12):2279–e1, 2020.

Darshil Shah, Lokesh Naik, Bhawan Paunipagar, Darshana Rasalkar, Kshitij Chaudhary, and Vaibhav Bagaria. Setting up 3d printing services for orthopaedic applications: A step-by-step guide and an overview of 3dbiosphere. Indian Journal of Orthopaedics, pages 1–11, 2020.

Brett D Steineman, Robert F LaPrade, and Tammy L Haut Donahue. Nonanatomic placement of posteromedial meniscal root repairs: A finite element study. Journal of biomechanical engineering, 142(8), 2020.

Marina Strocchi, Christoph M Augustin, Matthias AF Gsell, Elias Karabelas, Aurel Neic, Karli Gillette, Orod Razeghi, Anton J Prassl, Edward J Vigmond, Jonathan M Behar, et al. A publicly available virtual cohort of four-chamber heart meshes for cardiac electro-mechanics simulations. PloS one, 15(6):e0235145, 2020.

Kathilynn Patricia Teeling, Dirk Werling, and Dagmar Berner. Preliminary volumetric calculation of the mucosal surface in the nares of lambs using a segmentation of computed tomographic images. Frontiers in Veterinary Science, 7, 2020.

Nicole Thompson, Enrico Ravagli, Svetlana Mastitskaya, Francesco Iacoviello, Kirill Aristovich, Justin Perkins, Paul R Shearing, and David Holder. Determining the fascicular anatomy of the porcine vagus nerve with microct. The FASEB Journal, 34(S1):1–1, 2020.

Nicole Thompson, Enrico Ravagli, Svetlana Mastitskaya, Francesco Iacoviello, Kirill Aristovich, Justin Perkins, Paul R Shearing, and David Holder. Microct optimisation for imaging fascicular anatomy in peripheral nerves. Journal of neuroscience methods, 338:108652, 2020.

Natalia A Trayanova and Kathleen Mcdowell. Personalized computational modeling of atrial fibrosis to guide catheter ablation of atrial fibrillation, October 27 2020. US Patent 10,813,698.

Natalia A Trayanova, Sohail Zahid, and Patrick Boyle. Systems and methods for simulation prediction of targets for catheter ablation of left atrial flutter in patients with atrial structural remodeling, November 24 2020. US Patent 10,842,401.

Amith Umesh, Kwame S Kutten, Patrick S Hogan, J Tilak Ratnanather, and Vikram S Chib. Motor cortical thickness is related to effort-based decision-making in humans. Journal of neurophysiology, 123(6):2373–2381, 2020.

Eduardo Enrique Valdez. Knee articular cartilage material properties estimation through fea. 2020.

Noraly MME van Meer, Uroš Cerkvenik, Christian M Schlepütz, Johan L van Leeuwen, and Sander WS Gussekloo. The ovipositor actuation mechanism of a parasitic wasp and its functional implications. Journal of anatomy, 237(4):689–703, 2020.

Cecilie Våpenstad, Siv Marit Lamøy, Frode Aasgaard, Asbjørn Ødegård, Torgeir K Haavik, Toril Nagelhus Hernes, Knut Haakon Stensæth, and Edmund Søvik. Operators believe patient-specific rehearsal improve individual and team performance. Minimally Invasive Therapy & Allied Technologies, pages 1–10, 2020.

Reiza D Ventura, Andrew R Padalhin, Boram Kim, MyoungKi Park, and Byong Taek Lee. Evaluation of bone regeneration potential of injectable extracellular matrix (ecm) from porcine dermis loaded with biphasic calcium phosphate (bcp) powder. Materials Science and Engineering: C, 110:110663, 2020.

Reiza D Ventura, Andrew R Padalhin, and Byong Taek Lee. Functionalization of extracellular matrix (ecm) on multichannel biphasic calcium phosphate (bcp) granules for improved bone regeneration. Materials & Design, 192:108653, 2020.

Alessio Virzì, Cécile Olivia Muller, Jean-Baptiste Marret, Eva Mille, Laureline Berteloot, David Grévent, Nathalie Boddaert, Pietro Gori, Sabine Sarnacki, and Isabelle Bloch. Comprehensive review of 3d segmentation software tools for mri usable for pelvic surgery planning. Journal of digital imaging, 33(1):99–110, 2020.

Marija Vukicevic, Stefano Filippini, and Stephen H Little. 3d modeling as a tool for structural heart interventions. In 3-Dimensional Modeling in Cardiovascular Disease, pages 87–102. Elsevier, 2020.

Shu Wang, Yohan Noh, Jemma Brown, Sébastien Roujol, Ye Li, Shuangyi Wang, Richard Housden, Mar Casajuana Ester, Maleha Al-Hamadani, Ronak Rajani, et al. Development and testing of an ultrasound-compatible cardiac phantom for interventional procedure simulation using direct three dimensional printing. 3D Printing and Additive Manufacturing, 7(6):269–278, 2020.

Mingxing Zhang, Ji Zhang, Yibo Wang, Jie Wang, Alecia M Achimovich, Scott T Acton, and Andreas Gahlmann. Non-invasive single-cell morphometry in living bacterial biofilms. Nature communications, 11(1):1–13, 2020.

Ruben Zwiers, Burak Görgec, C Niek van Dijk, and Leendert Blankevoort. Geometrical characteristics of the symptomatic and non-symptomatic ossa trigona. Foot and Ankle Surgery, 2020.

 

2019

Marios Antonakakis, Stefan Rampp, Christoph Kellinghaus, Carsten H Wolters, and Gabriel Moeddel. Individualized targeting and optimization of multi-channel transcranial direct current stimulation in drugresistant epilepsy. In 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE), pages 871–876. IEEE, 2019.

Yunus Ziya Arslan, Derya Karabulut, Faruk Ortes, and Marko B Popovic. Exoskeletons, exomusculatures, exosuits: dynamic modeling and simulation. Biomechatronics, pages 305–331, 2019.

R Dinesh Babu and D Devaprakasam. A review on additive manufacturing techniques in medical applications. Int. J. Adv. Sci. Eng. 5, (3):988–997, 2019.

Laura R Bear, Oumayma Bouhamama, Matthijs Cluitmans, Josselin Duchateau, Richard D Walton, Emma Abell, Charly Belterman, Michel Haissaguerre, Olivier Bernus, Ruben Coronel, et al. Advantages and pitfalls of noninvasive electrocardiographic imaging. Journal of electrocardiology, 57:S15–S20, 2019.

Cristina Bucchi, J Marcé-Nogué, KM Galler, and M Widbiller. Biomechanical performance of an immature maxillary central incisor after revitalization: a finite element analysis. International endodontic journal, 52(10):1508–1518, 2019.

Divaldo Camara, Fedor Panov, Holly Oemke, Saadi Ghatan, and Anthony Costa. Robotic surgical rehearsal on patient-specific 3d-printed skull models for stereoelectroencephalography (seeg). International journal of computer assisted radiology and surgery, 14(1):139–145, 2019.

Fernando O Campos, John Whitaker, Radhouene Neji, Sébastien Roujol, Mark O’Neill, Gernot Plank, and Martin J Bishop. Factors promoting conduction slowing as substrates for block and reentry in infarcted hearts. Biophysical journal, 117(12):2361–2374, 2019.

Edison F Carpio, Juan F Gomez, Rafael Sebastian, Alejandro Lopez-Perez, Eduardo Castellanos, Jesus Almendral, Jose M Ferrero, and Beatriz Trenor. Optimization of lead placement in the right ventricle during cardiac resynchronization therapy. A simulation study. Frontiers in physiology, 10:74, 2019.

Uroš Cerkvenik, Johan L Van Leeuwen, Alexander Kovalev, Stanislav N Gorb, Yoko Matsumura, and Sander WS Gussekloo. Stiffness gradients facilitate ovipositor bending and spatial probing control in a parasitic wasp. Journal of Experimental Biology, 222(9), 2019.

Craig J Daly. From confocal microscope to virtual reality and computer games; technical and educational considerations. Infocus Magazine, 54:51–59, 2019.

Pierre Decazes, David Tonnelet, Pierre Vera, and Isabelle Gardin. Anthropometer3d: automatic multislice segmentation software for the measurement of anthropometric parameters from ct of pet/ct. Journal of digital imaging, 32(2):241–250, 2019.

Saukko Annina EA, Mikael J Turunen, Honkanen Miitu KM, Lovric Goran, Tiitu Virpi, Honkanen Juuso TJ, Mark W Grinstaff, Jukka S Jurvelin, and Töyräs Juha. Simultaneous quantitation of cationic and non-ionic contrast agents in articular cartilage using synchrotron microct imaging. Scientific Reports (Nature Publisher Group), 9(1), 2019.

Pegah Ebrahimi. Patient-specific design of the right ventricle to pulmonary artery conduit via computational analysis. Master’s thesis, University of Sydney, 2019.

Kanwal M Farooqi, Cathleen Cooper, Anjali Chelliah, Omar Saeed, Paul J Chai, Sachin R Jambawalikar, Hod Lipson, Emile A Bacha, Andrew J Einstein, and Ulrich P Jorde. 3d printing and heart failure: the present and the future. JACC: Heart Failure, 7(2):132–142, 2019.

Manaal Fatima, Corey J Scholes, Emily Zhong, and Lawrence Kohan. Towards a dynamic model of the kangaroo knee for clinical insights into human knee pathology and treatment: establishing a static biomechanical profile. Biomimetics, 4(3):52, 2019.

Alice Constance Mayo Faulkner. Imaging of evoked neural activity in the rat brain using Electrical Impedance Tomography. PhD thesis, UCL (University College London), 2019.

Liuyang Feng, Hao Gao, Boyce Griffith, Steven Niederer, and Xiaoyu Luo. Analysis of a coupled fluid-structure interaction model of the left atrium and mitral valve. International journal for numerical methods in biomedical engineering, 35(11):e3254, 2019.

Bárbara Aline Gerke, Amanda Lury Yamashita, Eder Alberto Sigua-Rodriguez, Sergio Olate, Lilian Cristina Vessoni Iwaki, and Liogi Iwaki-Filho. Análisis descriptivo y cualitativo de tres software gratuitos usados para la conversión de formato dicom para stl. International journal of odontostomatology, 13(1):103–111, 2019.

Jessica E Goetz, Nicole Szabo, M James Rudert, Matthew D Karam, and Phinit Phisitkul. Achilles tension mitigates fibular malalignment measured in cadaveric studies of syndesmotic clamping. Foot & ankle international, 40(4):465–474, 2019.

Amir H Golnabi, Paul M Meaney, Shireen D Geimer, and Keith D Paulsen. 3-d microwave tomography using the soft prior regularization technique: Evaluation in anatomically realistic mri-derived numerical breast phantoms. IEEE Transactions on Biomedical Engineering, 66(9):2566–2575, 2019.

Debao Guan, Faizan Ahmad, Peter Theobald, Shwe Soe, Xiaoyu Luo, and Hao Gao. On the aic-based model reduction for the general holzapfel–ogden myocardial constitutive law. Biomechanics and modeling in mechanobiology, 18(4):1213–1232, 2019.

Liheng Guo and Daniel A Herzka. Sorted golden-step phase encoding: an improved golden-step imaging technique for cardiac and respiratory self-gated cine cardiovascular magnetic resonance imaging. Journal of Cardiovascular Magnetic Resonance, 21(1):1–15, 2019.

Anna Gustafsson, Mathias Wallin, and Hanna Isaksson. Age-related properties at the microscale affect crack propagation in cortical bone. Journal of biomechanics, 95:109326, 2019.

Lisa M Ho, Ehsan Samei, Maciej A Mazurowski, Yuese Zheng, Brian C Allen, Rendon C Nelson, and Daniele Marin. Can texture analysis be used to distinguish benign from malignant adrenal nodules on unenhanced ct, contrast-enhanced ct, or in-phase and opposed-phase mri? American Journal of Roentgenology, 212(3):554–561, 2019.

Kyler Hodgson, Ganesh Adluru, Lorie G Richards, Jennifer J Majersik, Greg Stoddard, Nagesh Adluru, and Edward DiBella. Predicting motor outcomes in stroke patients using diffusion spectrum mri microstructural measures. Frontiers in neurology, 10:72, 2019.

Miitu KM Honkanen, Hanna Matikka, Juuso TJ Honkanen, Abhisek Bhattarai, Mark W Grinstaff, Antti Joukainen, Heikki Kröger, Jukka S Jurvelin, and Juha Töyräs. Imaging of proteoglycan and water contents in human articular cartilage with full-body ct using dual contrast technique. Journal of Orthopaedic Research®, 37(5):1059–1070, 2019.

Bryan Howell, Ki Sueng Choi, Kabilar Gunalan, Justin Rajendra, Helen S Mayberg, and Cameron C McIntyre. Quantifying the axonal pathways directly stimulated in therapeutic subcallosal cingulate deep brain stimulation. Human brain mapping, 40(3):889–903, 2019.

Eileen Hwuang, Marta Vidorreta, Nadav Schwartz, Brianna F Moon, Kirpal Kochar, Matthew Dylan Tisdall, John A Detre, and Walter RT Witschey. Assessment of uterine artery geometry and hemodynamics in human pregnancy with 4d flow mri and its correlation with doppler ultrasound. Journal of Magnetic Resonance Imaging, 49(1):59–68, 2019.

Georgios Kissas, Yibo Yang, Eileen Hwuang, Walter R Witschey, John A Detre, and Paris Perdikaris. Machine learning in cardiovascular flows modeling: Predicting pulse wave propagation from non-invasive clinical measurements using physics-informed deep learning. arXiv preprint arXiv:1905.04817, 2019.

Young-Jun Koo and Seungbum Koo. Three-dimensional kinematic coupling of the healthy knee during treadmill walking. Journal of Biomechanical Engineering, 141(8), 2019.

Igor Križnar, Franco Zanini, and Aleš Fidler. Presentation of gaps around endodontic access cavity restoration by phase contrast-enhanced micro-ct. Clinical oral investigations, 23(5):2371–2381, 2019.

Sue Kulason, Daniel J Tward, Timothy Brown, Chelsea S Sicat, Chin-Fu Liu, J Tilak Ratnanather, Laurent Younes, Arnold Bakker, Michela Gallagher, Marilyn Albert, et al. Cortical thickness atrophy in the transentorhinal cortex in mild cognitive impairment. NeuroImage: Clinical, 21:101617, 2019.

Sophie Le Cann, Erika Tudisco, Mikael J Turunen, Alessandra Patera, Rajmund Mokso, Magnus Tägil, Ola Belfrage, Stephen A Hall, and Hanna Isaksson. Investigating the mechanical characteristics of bone-metal implant interface using in situ synchrotron tomographic imaging. Frontiers in bioengineering and biotechnology, 6:208, 2019.

Byong Taek Lee, Reiza Ventura, and Andrew R Padahin. Preparation method of injectable extracellular matrix based hydrogel derived from decellularized porcine skin loaded with bi-phasic calcium phosphate, January 17 2019. US Patent App. 15/986,971.

Alejandro Lopez-Perez, Rafael Sebastian, M Izquierdo, Ricardo Ruiz, Martin Bishop, and Jose M Ferrero. Personalized cardiac computational models: from clinical data to simulation of infarct-related ventricular tachycardia. Frontiers in physiology, 10:580, 2019.

Alejandro Daniel López Pérez. Computational modelling of the human heart and multiscale simulation of its electrophysiological activity aimed at the treatment of cardiac arrhythmias related to ischaemia and Infarction. PhD thesis, 2019.

René Machts, Alexander Hunold, Christian Drebenstedt, Michael Rock, Carsten Leu, and Jens Haueisen. Measurement and analysis of partial lightning currents in a head phantom. PloS one, 14(9):e0223133, 2019.

Giorgia Maroni, Daniele Panetta, Raffaele Luongo, Indira Krishnan, Federica La Rosa, Daniela Campani, Piero Salvadori, Patricia Iozzo, Francesco Blasi, Dmitry Penkov, et al. The role of prep1 in the regulation of mesenchymal stromal cells. International journal of molecular sciences, 20(15):3639, 2019.

Pablo Martínez Ulloa. Diseño y desarrollo de una metodología para la creación de modelos personalizados anatómicos y electrofisiológicos de aurículas y torso humanos. 2019.

Chaitanya Mitash, Abdeslam Boularias, and Kostas Bekris. Physics-based scene-level reasoning for object pose estimation in clutter. The International Journal of Robotics Research, page 0278364919846551, 2019.

Abigail R Moye, Nicola Bedoni, Jessica G Cunningham, Urikhan Sanzhaeva, Eric S Tucker, Peter Mathers, Virginie G Peter, Mathieu Quinodoz, Liliana P Paris, Luísa Coutinho-Santos, et al. Mutations in arl2bp, a protein required for ciliary microtubule structure, cause syndromic male infertility in humans and mice. PLoS genetics, 15(8):e1008315, 2019.

Katariina Myller. Quantitative contrast-enhanced computed tomography of the knee joint: from segmentation of articular cartilages to computational modelling of injuries. PhD thesis, Itä-Suomen yliopisto, 2019.

Katariina AH Myller, Rami K Korhonen, Juha Töyräs, Jari Salo, Jukka S Jurvelin, and Mikko S Venäläinen. Computational evaluation of altered biomechanics related to articular cartilage lesions observed in vivo. Journal of Orthopaedic Research®, 37(5):1042–1051, 2019.

Yukie Nagai, Yutaka Ohtake, and Hiromasa Suzuki. Segmo: Ct volume segmentation using a multilevel morse complex. Computer-Aided Design, 107:23–36, 2019.

Uyên Châu Nguyên, Matthijs JM Cluitmans, Marc Strik, Justin G Luermans, Suzanne Gommers, Joachim E Wildberger, Sebastiaan CAM Bekkers, Paul GA Volders, Casper Mihl, Frits W Prinzen, et al. Integration of cardiac magnetic resonance imaging, electrocardiographic imaging, and coronary venous computed tomography angiography for guidance of left ventricular lead positioning. EP Europace, 21(4):626–635, 2019.

Jennifer A Nichols, Kenneth Bo Foreman, Alexej Barg, Charles L Saltzman, and Andrew E Anderson. Ankle strength, muscle size, and adipose content following unilateral tibiotalar arthrodesis. Journal of Orthopaedic Research®, 37(5):1143–1152, 2019.

DI Nikitichev, K Murawski, G Harris, G Perkins, S Mosse, E Maneas, W Xia, V Arumuham, Mithun Kunyuil Ajith Singh, S Choong, et al. 3d printed kidney phantoms for an led-based photoacoustic and ultrasound imaging system. In Photons Plus Ultrasound: Imaging and Sensing 2019, volume 10878, page 1087868. International Society for Optics and Photonics, 2019.

Dominic Michael Padova. Batlas: variational reconstruction of a digital, three-dimensional atlas of the big brown bat (Eptesicus fuscus). PhD thesis, Johns Hopkins University, 2019.

Cong-Bo Phan, Kyoung Min Lee, Woo Young Jang, Soon Hyuck Lee, and Seungbum Koo. Flexible motion on articular surfaces in flatfoot during walking: Bi-planar fluoroscopic study. In 2019 Annual Meeting of Orthopaedic Research Society. Orthopaedic Research Society, 2019.

Cong-Bo Phan, Geonhui Shin, Kyoung Min Lee, and Seungbum Koo. Skeletal kinematics of the midtarsal joint during walking: Midtarsal joint locking revisited. Journal of biomechanics, 95:109287, 2019.

Anne-Marie Plancke, Adam Connolly, Philip M Gemmell, Aurel Neic, Luke C McSpadden, John Whitaker, Mark O’Neill, Christopher A Rinaldi, Ronak Rajani, Steven A Niederer, et al. Generation of a cohort of whole-torso cardiac models for assessing the utility of a novel computed shock vector efficiency metric for icd optimisation. Computers in biology and medicine, 112:103368, 2019.

Marthony Robins, Jayashree Kalpathy-Cramer, Nancy A Obuchowski, Andrew Buckler, Maria Athelogou, Rudresh Jarecha, Nicholas Petrick, Aria Pezeshk, Berkman Sahiner, and Ehsan Samei. Evaluation of simulated lesions as surrogates to clinical lesions for thoracic ct volumetry: the results of an international challenge. Academic radiology, 26(7):e161–e173, 2019.

Marthony Robins, Justin Solomon, Lynne M Hurwitz Koweek, Jared Christensen, and Ehsan Samei. Validation of lesion simulations in clinical ct data for anonymized chest and abdominal ct databases. Medical physics, 46(4):1931–1937, 2019.

Seungjun Ryu, Kyung-Tai Kim, Hyeon Seo, Jongwook Cho, Jiyoung Park, Sung Chan Jun, and Hyoung-Ihl Kim. Effect of sinusoidal electrical cortical stimulation on brain cells. bioRxiv, page 855395, 2019.

Babak N Safa, John M Peloquin, Jessica R Natriello, Jeffrey L Caplan, and Dawn M Elliott. 3d microstructure of tendon collagen fibrils using serial block-face sem and a mechanical model for load transfer. bioRxiv, page 547281, 2019.

Babak N Safa, John M Peloquin, Jessica R Natriello, Jeffrey L Caplan, and Dawn M Elliott. Helical fibrillar microstructure of tendon using serial block-face scanning electron microscopy and a mechanical model for interfibrillar load transfer. Journal of the Royal Society Interface, 16(160):20190547, 2019.

Elena Sanguinetti, Maria Angela Guzzardi, Maria Tripodi, Daniele Panetta, Marta Selma-Royo, Alessandro Zega, Mauro Telleschi, Maria Carmen Collado, and Patricia Iozzo. Microbiota signatures relating to reduced memory and exploratory behaviour in the offspring of overweight mothers in a murine model. Scientific reports, 9(1):1–12, 2019.

Annina EA Saukko, Mikael J Turunen, Miitu KM Honkanen, Goran Lovric, Virpi Tiitu, Juuso TJ Honkanen, Mark W Grinstaff, Jukka S Jurvelin, and Juha Töyräs. Simultaneous quantitation of cationic and non-ionic contrast agents in articular cartilage using synchrotron microct imaging. Scientific reports, 9(1):1–9, 2019.

František Sejda. Biomechanika-osteosyntéza zlomenin calcanea. 2019.

W Shu, R Kawal, G Harminder, W Weifeng, F Joao Filipe, Yohan Noh, U Jesus, S Julio, R Ronak, L Pablo, et al. Manufacturing of ultrasound-and mri-compatible aortic valves using 3d printing for analysis and simulation. 2019.

Geetha Srinivasan, Andre Dagostin, Richardson N Leão, Veeramuthu Balakrishnan, Paul Holcomb, Dakota Jackson, George Spirou, and Henrique von Gersdorff. Dendritic speeding of synaptic potentials in an auditory brainstem principal neuron. bioRxiv, page 688309, 2019.

Teneale A Stewart, Katherine Hughes, Alexander J Stevenson, Natascia Marino, Adler L Ju, Michael Morehead, and Felicity M Davis. Mammary mechanobiology: mechanically-activated ion channels in lactation and involution. bioRxiv, page 649038, 2019.

Kirsten E Stoner, Kingsley O Abode-Iyamah, Vincent A Magnotta, Matthew A Howard, and Nicole M Grosland. Measurement of in vivo spinal cord displacement and strain fields of healthy and myelopathic cervical spinal cord. Journal of Neurosurgery: Spine, 31(1):53–59, 2019.

Ryan S Stowers, Anna Shcherbina, Johnny Israeli, Joshua J Gruber, Julie Chang, Sungmin Nam, Atefeh Rabiee, Mary N Teruel, Michael P Snyder, Anshul Kundaje, et al. Matrix stiffness induces a tumorigenic phenotype in mammary epithelium through changes in chromatin accessibility. Nature biomedical engineering, 3(12):1009–1019, 2019.

Susumu Tao, Michael A Guttman, Sarah Fink, Hassan Elahi, Kaustubha D Patil, Hiroshi Ashikaga, Aravindan D Kolandaivelu, Ronald D Berger, Marc K Halushka, Ehud J Schmidt, et al. Ablation lesion characterization in scarred substrate assessed using cardiac magnetic resonance. JACC: Clinical Electrophysiology, 5(1):91–100, 2019.

Mirana Taz, Preeti Makkar, Khan Mohammad Imran, DW Jang, Yong-Sik Kim, and Byong-Taek Lee. Bone regeneration of multichannel biphasic calcium phosphate granules supplemented with hyaluronic acid. Materials Science and Engineering: C, 99:1058–1066, 2019.

Aniket Tekawade, Brandon A Sforzo, Katarzyna E Matusik, Alan L Kastengren, and Christopher F Powell. High-fidelity geometry generation from ct data using convolutional neural networks. In Developments in X-Ray Tomography XII, volume 11113, page 111131X. International Society for Optics and Photonics, 2019.

Daniel Tovbis. Automatic Segmentation and Three-dimensional Reconstruction of Fascicles in Peripheral Nerves. PhD thesis, 2019.

Prescott Vayda. Exceptionally Preserved Fossils from the Silica Shale Lagerstätte (Middle Devonian) of Ohio, Michigan, and Indiana: XCT Reveals Detailed Anatomical Information. PhD thesis, The Ohio State University, 2019.

Shu Wang, Harminder Gill, Weifeng Wan, Helen Tricker, Joao Filipe Fernandes, Yohan Noh, Sergio Uribe, Jesus Urbina, Julio Sotelo, Ronak Rajani, et al. Manufacturing of ultrasound-and mri-compatible aortic valves using 3d printing for analysis and simulation. In International Workshop on Statistical Atlases and Computational Models of the Heart, pages 12–21. Springer, 2019.

Tzu-Ching Wu, Xu Wang, and David M Umulis. Ground truth annotator and 3d dataset generator for validation of nuclei segmentation programs. In 2019 12th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI), pages 1–4. IEEE, 2019.

Rui Zhang, Ling Wang, Yanyu Lin, Minghui Yang, Zhe Guo, Wei Xia, Jie Wei, Chen Yi, Xinbao Wu, Xiaoguang Cheng, et al. A novel method for estimating nail-tract bone density for intertrochanteric fractures. Journal of orthopaedic translation, 18:40–47, 2019.

 

2018

Kingsley O Abode-Iyamah, Kirsten E Stoner, Liesl N Close, Nicole A DeVries Watson, Oliver E Flouty, Nicole M Grosland, and Matthew A Howard III. Volume of brain herniation after decompressive craniectomy in patients with traumatic brain injury. World neurosurgery, 118:e414–e421, 2018.

Isaac O Afara, Cristina Florea, Ismail A Olumegbon, Chibuzor T Eneh, Markus KH Malo, Rami K Korhonen, and Juha Töyräs. Characterizing human subchondral bone properties using near-infrared (nir) spectroscopy. Scientific reports, 8(1):1–10, 2018.

Ross W Anderson, AmirAli Farokhniaee, Kabilar Gunalan, Bryan Howell, and Cameron C McIntyre. Action potential initiation, propagation, and cortical invasion in the hyperdirect pathway during subthalamic deep brain stimulation. Brain stimulation, 11(5):1140–1150, 2018.

Omar Badreddin, Wahab Hamou-Lhadj, Vahdat Abdelzad, Rahad Khandoker, and Maged Elassar. Collaborative software design and modeling in open source systems. In International Conference on System Analysis and Modeling, pages 219–228. Springer, Cham, 2018.

Sahar Bakhshian, Zhuofan Shi, Muhammad Sahimi, Theodore T Tsotsis, and Kristian Jessen. Image-based modeling of gas adsorption and deformation in porous media. Scientific reports, 8(1):1–12, 2018.

Huda S Basloom. A comparison study between tetrahedral mesh and hexahedral mesh. In 2018 21st Saudi Computer Society National Computer Conference (NCC), pages 1–6. IEEE, 2018.

Leila Cristina C Bergamasco, Carlos E Rochitte, and Fátima LS Nunes. 3d medical objects processing and retrieval using spherical harmonics: a case study with congestive heart failure mri exams. In Proceedings of the 33rd Annual ACM Symposium on Applied Computing, pages 22–29, 2018.

Paul O Bolcos, Mika E Mononen, Ali Mohammadi, Mohammadhossein Ebrahimi, Matthew S Tanaka, Michael A Samaan, Richard B Souza, Xiaojuan Li, Juha-Sampo Suomalainen, Jukka S Jurvelin, et al. Comparison between kinetic and kinetic-kinematic driven knee joint finite element models. Scientific reports, 8(1):1–11, 2018.

Nabil E Boutagy, Jing Wu, Zhengxi Cai, Wenjie Zhang, Carmen J Booth, Tassos C Kyriakides, Daniel Pfau, Tim Mulnix, Zhao Liu, Edward J Miller, et al. In vivo reactive oxygen species detection with a novel positron emission tomography tracer, 18f-dhmt, allows for early detection of anthracyclineinduced cardiotoxicity in rodents. JACC: Basic to Translational Science, 3(3):378–390, 2018.

Ute Brinker, Hella Harten-Buga, Andreas Staude, Detlef Jantzen, and Järg Orschiedt. Perimortem lesions on human bones from the bronze age battlefield in the tollense valley: An interdisciplinary approach. In Prehistoric Warfare and Violence, pages 39–60. Springer, Cham, 2018.

MA Burgos, E Sanmiguel-Rojas, Narinder Singh, and F Esteban-Ortega. Digbody®: a new 3d modeling tool for nasal virtual surgery. Computers in biology and medicine, 98:118–125, 2018.

Andrea Patricia Caceres. The effects of implant design variations on shoulder instability following reverse shoulder arthroplasty. 2018.

LE Carvalho, Antonio Carlos Sobieranski, and Aldo von Wangenheim. 3d segmentation algorithms for computerized tomographic imaging: a systematic literature review. Journal of digital imaging, 31(6):799–850, 2018.

Matthijs Cluitmans, Joël Karel, Pietro Bonizzi, Paul Volders, Ronald Westra, and Ralf Peeters. Wavelet-promoted sparsity for non-invasive reconstruction of electrical activity of the heart. Medical & biological engineering & computing, 56(11):2039–2050, 2018.

Jonathan P Cranford, Thomas J O’Hara, Christopher T Villongco, Omar M Hafez, Robert C Blake, Joseph Loscalzo, Jean-Luc Fattebert, David F Richards, Xiaohua Zhang, James N Glosli, et al. Efficient computational modeling of human ventricular activation and its electrocardiographic representation: A sensitivity study. Cardiovascular engineering and technology, 9(3):447–467, 2018.

Dongdong Deng, Plamen Nikolov, Hermenegild J Arevalo, and Natalia A Trayanova. Optimal contrastenhanced mri image thresholding for accurate prediction of ventricular tachycardia using ex-vivo high resolution models. Computers in biology and medicine, 102:426–432, 2018.

Alpay Tamer ERTÜRK and İsmet AYDIN. Alüminyum metal köpüğün bilgisayar destekli mikro-ct tomo-grafi ile yapısal karakterizasyonu. 2018.

Kanwal M Farooqi and Feroze Mahmood. Innovations in preoperative planning: insights into another dimension using 3d printing for cardiac disease. Journal of cardiothoracic and vascular anesthesia, 32(4):1937–1945, 2018.

Thomas E Fastl, Catalina Tobon-Gomez, Andrew Crozier, John Whitaker, Ronak Rajani, Karen P McCarthy, Damian Sanchez-Quintana, Siew Y Ho, Mark D O’Neill, Gernot Plank, et al. Personalized computational modeling of left atrial geometry and transmural myofiber architecture. Medical image analysis, 47:180–190, 2018.

Valeria Filippou and Charalampos Tsoumpas. Recent advances on the development of phantoms using 3d printing for imaging with ct, mri, pet, spect, and ultrasound. Medical physics, 45(9):e740– e760, 2018.

Brent Foster, Anand A Joshi, Marissa Borgese, Yasser Abdelhafez, Robert D Boutin, and Abhijit J Chaudhari. Wrist: A wrist image segmentation toolkit for carpal bone delineation from mri. Computerized Medical Imaging and Graphics, 63:31–40, 2018.

Eloy García, Yago Diez, Oliver Diaz, Xavier Lladó, Robert Martí, Joan Martí, and Arnau Oliver. A step-by-step review on patient-specific biomechanical finite element models for breast mri to x-ray mammography registration. Medical physics, 45(1):e6–e31, 2018.

Patricia Garcia-Canadilla, Hector Dejea, Anne Bonnin, Vedrana Balicevic, Sven Loncaric, Chong Zhang, Constantine Butakoff, Jazmin Aguado-Sierra, Mariano Vázquez, Laurence H Jackson, et al. Complex congenital heart disease associated with disordered myocardial architecture in a midtrimester human fetus. Circulation: Cardiovascular Imaging, 11(10):e007753, 2018.

Arnold D Gomez, Andrew K Knutsen, Fangxu Xing, Yuan-Chiao Lu, Deva Chan, Dzung L Pham, Philip Bayly, and Jerry L Prince. 3-d measurements of acceleration-induced brain deformation via harmonic phase analysis and finite-element models. IEEE Transactions on Biomedical Engineering, 66(5):1456– 1467, 2018.

Joachim Greiner, Aparna C Sankarankutty, Gunnar Seemann, Thomas Seidel, and Frank B Sachse. Confocal microscopy-based estimation of parameters for computational modeling of electrical conduction in the normal and infarcted heart. Frontiers in physiology, 9:239, 2018.

Kabilar Gunalan, Bryan Howell, and Cameron C McIntyre. Quantifying axonal responses in patientspecific models of subthalamic deep brain stimulation. Neuroimage, 172:263–277, 2018.

Anna Gustafsson, Neashan Mathavan, Mikael J Turunen, Jonas Engqvist, Hanifeh Khayyeri, Stephen A Hall, and Hanna Isaksson. Linking multiscale deformation to microstructure in cortical bone using in situ loading, digital image correlation and synchrotron x-ray scattering. Acta biomaterialia, 69:323–331, 2018.

Yeisson Gutiérrez, David Ott, Mareike Töpperwien, Tim Salditt, and Christoph Scherber. X-ray computed tomography and its potential in ecological research: A review of studies and optimization of specimen preparation. Ecology and evolution, 8(15):7717–7732, 2018.

Nawar Habboush, Laith Hamid, Michael Siniatchkin, Ulrich Stephani, and Andreas Galka. Pipeline for forward modeling and source imaging of magnetocardiographic recordings via spatiotemporal kalman filtering. In 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pages 199–202. IEEE, 2018.

Omar Mohamed Hafez. Robust Image-Based Modeling and Simulation in Biomechanics. University of California, Davis, 2018.

Lei Jin, Chao Li, Balaji Palanisamy, and James Joshi. k-trustee: Location injection attack-resilient anonymization for location privacy. Computers & Security, 78:212–230, 2018.

Rebecca J Kamil, Athira Jacob, J Tilak Ratnanather, Susan M Resnick, and Yuri Agrawal. Vestibular function and hippocampal volume in the baltimore longitudinal study of aging (blsa). Otology & neurotology: official publication of the American Otological Society, American Neurotology Society [and] European Academy of Otology and Neurotology, 39(6):765, 2018.

Rahul Kannan. Role of Virtual Reality (VR) Technology as a Training Tool for the Students in Learning Wrist Anatomy. PhD thesis, University of Illinois at Chicago, 2018.

Rashed Karim, Lauren-Emma Blake, Jiro Inoue, Qian Tao, Shuman Jia, R James Housden, Pranav Bhagirath, Jean-Luc Duval, Marta Varela, Jonathan M Behar, et al. Algorithms for left atrial wall segmentation and thickness–evaluation on an open-source ct and mri image database. Medical image analysis, 50:36–53, 2018.

S Khamzin, A Dokuchaev, A Bazhutina, T Chumarnaya, S Zubarev, T Lyubimtseva, D Lebedev, and O Solovyova. Optimization of left ventricular lead position based on a computer model of the heart for cardiac resynchronization therapy. In 2018 Ural Symposium on Biomedical Engineering, Radioelectronics and Information Technology (USBEREIT), pages 68–71. IEEE, 2018.

Rahad Khandoker and Maged Elassar. Collaborative software design and modeling in open source systems. In System Analysis and Modeling. Languages, Methods, and Tools for Systems Engineering: 10th International Conference, SAM 2018, Copenhagen, Denmark, October 15–16, 2018, Proceedings, volume 11150, page 219. Springer, 2018.

Theodora Kontodina. Digital fabrication of patient specific 3d-printed medical models. 2018.

Martin Květň. Geometrické charakteristiky svalü horní končetiny. B.S. thesis, České vysoké učení technické v Praze. Vypočetní a informační centrum., 2018.

Sander Land and Steven Alexander Niederer. Influence of atrial contraction dynamics on cardiac function. International journal for numerical methods in biomedical engineering, 34(3):e2931, 2018.

Julian KA Langowski, Henk Schipper, Anne Blij, Frank T van den Berg, Sander WS Gussekloo, and Johan L van Leeuwen. Force-transmitting structures in the digital pads of the tree frog hyla cinerea: a functional interpretation. Journal of anatomy, 233(4):478–495, 2018.

Christopher L Lee, Max C Dietrich, Uma G Desai, Ankur Das, Suhong Yu, Hong F Xiang, C Carl Jaffe, Ariel E Hirsch, and B Nicolas Bloch. A three-dimensional-printed patient-specific phantom for external beam radiation therapy of prostate cancer. Journal of engineering and science in medical diagnostics and therapy, 1(4), 2018.

Dongheon Lee, Hyoun-Joong Kong, Donguk Kim, Jin Wook Yi, Young Jun Chai, Kyu Eun Lee, and Hee Chan Kim. Preliminary study on application of augmented reality visualization in robotic thyroid surgery. Annals of surgical treatment and research, 95(6):297, 2018.

Dongheon Lee, Jin Wook Yi, Jeeyoung Hong, Young Jun Chai, Hee Chan Kim, and Hyoun-Joong Kong. Augmented reality to localize individual organ in surgical procedure. Healthcare informatics research, 24(4):394, 2018.

Žiga Lesjak, Alfiia Galimzianova, Aleš Koren, Matej Lukin, Franjo Pernuš, Boštjan Likar, and Žiga Špiclin. A novel public mr image dataset of multiple sclerosis patients with lesion segmentations based on multi-rater consensus. Neuroinformatics, 16(1):51–63, 2018.

Gregory Madejski, Kilean Lucas, Flavius C Pascut, Kevin F Webb, and James L McGrath. Tem tomography of pores with application to computational nanoscale flows in nanoporous silicon nitride (npn). Membranes, 8(2):26, 2018.

Katarzyna E Matusik, Daniel J Duke, Alan L Kastengren, Nicholas Sovis, Andrew B Swantek, and Christopher F Powell. High-resolution x-ray tomography of engine combustion network diesel injectors. International Journal of Engine Research, 19(9):963–976, 2018.

Abbas Memiş, Songül Albayrak, and Fuat Bilgili. A brief overview of medical software tools used in mr image segmentation. In 2018 Medical Technologies National Congress (TIPTEKNO), pages 1–4. IEEE, 2018.

Jordi Mill, Andy L Olivares, Etelvino Silva, Ibai Genua, Alvaro Fernandez, Ainhoa Aguado, Marta Nuñez-Garcia, Tom de Potter, Xavier Freixa, and Oscar Camara. Joint analysis of personalized in-silico haemodynamics and shape descriptors of the left atrial appendage. In International Workshop on Statistical Atlases and Computational Models of the Heart, pages 58–66. Springer, 2018.

Pedro C Miranda, María A Callejón-Leblic, Ricardo Salvador, and Giulio Ruffini. Realistic modeling of transcranial current stimulation: The electric field in the brain. Current Opinion in Biomedical Engineering, 8:20–27, 2018.

Katariina AH Myller, Juuso TJ Honkanen, Jukka S Jurvelin, Simo Saarakkala, Juha Töyräs, and Sami P Väänänen. Method for segmentation of knee articular cartilages based on contrast-enhanced ct images. Annals of biomedical engineering, 46(11):1756–1767, 2018.

UC Nguyên, MJM Cluitmans, JGLM Luermans, M Strik, CB de Vos, BLJH Kietselaer, JE Wildberger, FW Prinzen, C Mihl, and K Vernooy. Visualisation of coronary venous anatomy by computed tomography angiography prior to cardiac resynchronisation therapy implantation. Netherlands Heart Journal, 26(9):433–444, 2018.

Seyed Hossein Nozadi, Samuel Kadoury, Alzheimer’s Disease Neuroimaging Initiative, et al. Classification of alzheimer’s and mci patients from semantically parcelled pet images: a comparison between av45 and fdg-pet. International journal of biomedical imaging, 2018, 2018.

Rafael Sachetto Oliveira, Sergio Alonso, Fernando Otaviano Campos, Bernardo Martins Rocha, João Filipe Fernandes, Titus Kuehne, and Rodrigo Weber Dos Santos. Ectopic beats arise from micro-reentries near infarct regions in simulations of a patient-specific heart model. Scientific reports, 8(1):1–14, 2018.

Bruno Paun, Bart Bijnens, Andrew C Cook, Timothy J Mohun, and Constantine Butakoff. Quantification of the detailed cardiac left ventricular trabecular morphogenesis in the mouse embryo. Medical image analysis, 49:89–104, 2018.

Elizabeth Rose Perica and Zhonghua Sun. A systematic review of three-dimensional printing in liver disease. Journal of digital imaging, 31(5):692–701, 2018.

Palani Taver Permeswaran. Validation of computational methods for fracture assessment of metastatic disease to the proximal femur. 2018.

Cong-Bo Phan, Duc-Phong Nguyen, Kyoung-Min Lee, and Seungbum Koo. Relative movement on the articular surfaces of the tibiotalar and subtalar joints during walking. Bone & joint research, 7(8):501– 507, 2018.

Anne-Marie Plancke. Evaluation of novel s-icd electrode placements using computational modeling, 2018.

LT Quispe, IS Brandt, and AA Pasa. Faradaic efficiency of porous electrodeposits: an application to β-ni (oh) 2 films. Journal of Solid State Electrochemistry, 22(10):3025–3033, 2018.

Deepak Bushan Raina, David Larsson, Filip Mrkonjic, Hanna Isaksson, Ashok Kumar, Lars Lidgren, and Magnus Tägil. Gelatin-hydroxyapatite-calcium sulphate based biomaterial for long term sustained delivery of bone morphogenic protein-2 and zoledronic acid for increased bone formation: in-vitro and in-vivo carrier properties. Journal of controlled release, 272:83–96, 2018.

Tanisha Thasa Ratha Rajah, Yin Kia Chiam, and Zati Azizul. Fuzzy-based framework for the selection of image processing software for diagnosis and outcome prediction of cardiac diseases. Advanced Science Letters, 24(2):1109–1113, 2018.

James Robertson, Jillian Urban, Joel Stitzel, and Bradley E Treeby. The effects of image homogenisation on simulated transcranial ultrasound propagation. Physics in Medicine & Biology, 63(14):145014, 2018.

Marthony Robins, Justin Solomon, Jocelyn Hoye, Taylor Smith, Yuese Zheng, Lukas Ebner, Kingshuk Roy Choudhury, and Ehsan Samei. Interchangeability between real and three-dimensional simulated lung tumors in computed tomography: an interalgorithm volumetry study. Journal of Medical Imaging, 5(3):035504, 2018.

Federica Sacco, Bruno Paun, Oriol Lehmkuhl, Tinen L Iles, Paul A Iaizzo, Guillaume Houzeaux, Mariano Vázquez, Constantine Butakoff, and Jazmin Aguado-Sierra. Evaluating the roles of detailed endocardial structures on right ventricular haemodynamics by means of cfd simulations. International journal for numerical methods in biomedical engineering, 34(9):e3115, 2018.

Federica Sacco, Bruno Paun, Oriol Lehmkuhl, Tinen L Iles, Paul A Iaizzo, Guillaume Houzeaux, Mariano Vázquez, Constantine Butakoff, and Jazmin Aguado-Sierra. Left ventricular trabeculations decrease the wall shear stress and increase the intra-ventricular pressure drop in cfd simulations. Frontiers in physiology, 9:458, 2018.

Takayuki Shijo, Takashi Shirakawa, Masao Yoshitatsu, and Keiji Iwata. Stent grafting simulation using a three-dimensional printed model for extensive aortic arch repair combined with coarctation. European Journal of Cardio-Thoracic Surgery, 54(3):593–595, 2018.

Elanchezhian Somasundaram, Joanna Deaton, Robert Kaufman, and Samuel Brady. Fully automated tissue classifier for contrast-enhanced ct scans of adult and pediatric patients. Physics in Medicine & Biology, 63(13):135009, 2018.

Jeno Szep, Ali Akoglu, Salim Hariri, and Talal Moukabary. Two-level autonomous optimizations based on ml for cardiac fem simulations. In 2018 IEEE International Conference on Autonomic Computing (ICAC), pages 101–110. IEEE, 2018.

Mirana Taz, Sang Ho Bae, Hae Il Jung, Hyun-Deuk Cho, and Byong-Taek Lee. Bone regeneration strategy by different sized multichanneled biphasic calcium phosphate granules: In vivo evaluation in rabbit model. Journal of biomaterials applications, 32(10):1406–1420, 2018.

Roberto Torelli, Katarzyna E Matusik, Kyle C Nelli, Alan L Kastengren, Kamel Fezzaa, Christopher F Powell, Sibendu Som, Yuanjiang Pei, Tom Tzanetakis, Yu Zhang, et al. Evaluation of shot-to-shot in-nozzle flow variations in a heavy-duty diesel injector using real nozzle geometry. SAE International Journal of Fuels and Lubricants, 11(4):379–396, 2018.

David Turický. Modelové výpočty pro klinickou léčbu hypertermií. B.S. thesis, České vysoké učení technicke v Praze. Vypočetní a informační centrum., 2018.

Francesca Uccheddu, Monica Carfagni, Lapo Governi, Rocco Furferi, Yary Volpe, and Erica Nocerino. 3d printing of cardiac structures from medical images: an overview of methods and interactive tools. International Journal on Interactive Design and Manufacturing (IJIDeM), 12(2):597–609, 2018.

Anna Witkowska-Wrobel, Kirill Aristovich, Mayo Faulkner, James Avery, and David Holder. Feasibility of imaging epileptic seizure onset with eit and depth electrodes. Neuroimage, 173:311–321, 2018.

Xinbo Yu, Yang Hu, Marcelo Freire, Pei Yu, Toshihisa Kawai, and Xiaozhe Han. Role of toll-like receptor 2 in inflammation and alveolar bone loss in experimental peri-implantitis vs. periodontitis. Journal of periodontal research, 53(1):98, 2018.

 

2017

Celine DG Abueva, Dong-Woo Jang, Andrew Padalhin, and Byong-Taek Lee. Phosphonate-chitosan functionalization of a multi-channel hydroxyapatite scaffold for interfacial implant-bone tissue integration. Journal of Materials Chemistry B, 5(6):1293–1301, 2017.

H Altakroury, L Koessler, J Hofmanis, and V Louis-Dorr. P077 in-vivo estimation of head conductivities frequency response with ies and seeg-eeg. Clinical Neurophysiology, 128(3):e43–e44, 2017.

Julie Arnaud, Stefano Benazzi, Matteo Romandini, Alessandra Livraghi, Daniele Panetta, Piero A Salvadori, Lisa Volpe, and Marco Peresani. A neanderthal deciduous human molar with incipient carious infection from the middle palaeolithic de nadale cave, italy. American journal of physical anthropology, 162(2):370–376, 2017.

Ü Aydin, S Rampp, A Wollbrink, H Kugel, J-H Cho, Thomas R Knösche, C Grova, J Wellmer, and CH Wolters. Zoomed mri guided by combined eeg/meg source analysis: a multimodal approach for optimizing presurgical epilepsy work-up and its application in a multi-focal epilepsy patient case study. Brain topography, 30(4):417–433, 2017.

Peyman N Azadani, Jordan B King, Mobin Kheirkhahan, Lowell Chang, Nassir F Marrouche, and Brent D Wilson. Left atrial fibrosis is associated with new-onset heart failure in patients with atrial fibrillation. International journal of cardiology, 248:161–165, 2017.

Pat Banerjee, Mengqi Hu, Rahul Kannan, and Srinivasan Krishnaswamy. A semi-automated approach to improve the efficiency of medical imaging segmentation for haptic rendering. Journal of digital imaging, 30(4):519–527, 2017.

J Been, D Kim, H Seo, and SC Jun. P076 a beagle model for understanding tdcs effects. Clinical Neurophysiology, 128(3):e42–e43, 2017.

M Benassarou, T Schouman, L Pazart, F Gindraux, C Bertolus, and C Meyer. Creating 3d-printable stl models from dicom data: Are all the software solutions equivalent? In Orthopaedic Proceedings, volume 99, pages 40–40. The British Editorial Society of Bone & Joint Surgery, 2017.

John P Bois, James Glockner, Phillip M Young, Thomas A Foley, Seth Sheldon, Darrell B Newman, Grace Lin, Douglas L Packer, and Peter A Brady. Low incidence of left atrial delayed enhancement with mri in patients with af: a single-centre experience. Open Heart, 4(1), 2017.

A Bozkurt, K Kose, C Alessi-Fox, JG Dy, DH Brooks, and M Rajadhyaksha. Unsupervised delineation of stratum corneum using reflectance confocal microscopy and spectral clustering. Skin Research and Technology, 23(2):176–185, 2017.

Thore M Bücking, Emma R Hill, James L Robertson, Efthymios Maneas, Andrew A Plumb, and Daniil I Nikitichev. From medical imaging data to 3d printed anatomical models. PloS one, 12(5):e0178540, 2017.

Laura Buti, Adeline Le Cabec, Daniele Panetta, Maria Tripodi, Piero A Salvadori, Jean-Jacques Hublin, Robin NM Feeney, and Stefano Benazzi. 3d enamel thickness in neandertal and modern human permanent canines. Journal of Human Evolution, 113:162–172, 2017.

Adrienne E Campbell-Washburn, Mohammad A Tavallaei, Mihaela Pop, Elena K Grant, Henry Chubb, Kawal Rhode, and Graham A Wright. Real-time mri guidance of cardiac interventions. Journal of Magnetic Resonance Imaging, 46(4):935–950, 2017.

Joshua Cates, Lisa Nevell, Suresh I Prajapati, Laura D Nelon, Jerry Y Chang, Matthew E Randolph, Bernard Wood, Charles Keller, and Ross T Whitaker. Shape analysis of the basioccipital bone in pax7-deficient mice. Scientific reports, 7(1):1–10, 2017.

Malgorzata Chrusciel-Nogalska, Tomasz Smektala, Marcin Tutak, Katarzyna Sporniak-Tutak, and Raphael Olszewski. Open-source software in dentistry: a systematic review. International journal of technology assessment in health care, 33(4):487, 2017.

Henry Chubb, James L Harrison, Steffen Weiss, Sascha Krueger, Peter Koken, Lars Ø Bloch, Won Yong Kim, Gregg S Stenzel, Steven R Wedan, Jennifer L Weisz, et al. Development, preclinical validation, and clinical translation of a cardiac magnetic resonance-electrophysiology system with active catheter tracking for ablation of cardiac arrhythmia. JACC: Clinical Electrophysiology, 3(2):89– 103, 2017.

Matthijs JM Cluitmans, Michael Clerx, Nele Vandersickel, Ralf LM Peeters, Paul GA Volders, and Ronald L Westra. Physiology-based regularization of the electrocardiographic inverse problem. Medical & biological engineering & computing, 55(8):1353–1365, 2017.

M Coulson and L Wyld. Rates of breast reconstruction in women over 70 years of age in the uk: An interim analysis of the age gap study. International Journal of Surgery, 47:S16, 2017.

Andela Davidović, Yves Coudière, and Yves Bourgault. Image-based modeling of the heterogeneity of propagation of the cardiac action potential. example of rat heart high resolution mri. In International Conference on Functional Imaging and Modeling of the Heart, pages 260–270. Springer, Cham, 2017.

G De-Deus, FG Belladonna, EJNL Silva, EM Souza, JCA Carvalhal, R Perez, RT Lopes, and MA Versiani. Micro-ct assessment of dentinal micro-cracks after root canal filling procedures. International endodontic journal, 50(9):895–901, 2017.

Simon Devos, Wouter Van Putte, Jolien Vitse, Gonzalez Van Driessche, Stephan Stremersch, Wim Van Den Broek, Koen Raemdonck, Kevin Braeckmans, Henning Stahlberg, Misha Kudryashev, et al. Membrane vesicle secretion and prophage induction in multidrug-resistant stenotrophomonas maltophilia in response to ciprofloxacin stress. Environmental microbiology, 19(10):3930–3937, 2017.

Jiayu Dong. TOADFISH BEHAVIORAL ROBOT FOR FISH AGGRESSION STUDY. PhD thesis, Cornell University, 2017.

Daniel J Duke, Charles EA Finney, Alan Kastengren, Katarzyna Matusik, Nicolas Sovis, Louis Santodonato, Hassina Bilheux, David Schmidt, Christopher Powell, and Todd Toops. High-resolution x-ray and neutron computed tomography of an engine combustion network spray g gasoline injector. SAE International Journal of Fuels and Lubricants, 10(2):328–343, 2017.

Daniel J Duke, Alan L Kastengren, Katarzyna E Matusik, Andrew B Swantek, Christopher F Powell, Raul Payri, Daniel Vaquerizo, Lama Itani, Gilles Bruneaux, Ronald O Grover Jr, et al. Internal and near nozzle measurements of engine combustion network “spray g” gasoline direct injectors. Experimental Thermal and Fluid Science, 88:608–621, 2017.

Jean Dumoncel. Analyse morphométrique 3D de structures anatomiques pour la paléoanthropologie. PhD thesis, Université Paul Sabatier-Toulouse III, 2017.

Cibele V Falkenberg, Evren U Azeloglu, Mark Stothers, Thomas J Deerinck, Yibang Chen, John C He, Mark H Ellisman, James C Hone, Ravi Iyengar, and Leslie M Loew. Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability. PLoS computational biology, 13(3):e1005433, 2017.

Mayo Faulkner, Markus Jehl, Kirill Aristovich, James Avery, Anna Witkowska-Wrobel, and David Holder. Optimisation of current injection protocol based on a region of interest. Physiological measurement, 38(6):1158, 2017.

Ana Ferrer-Albero, Eduardo J Godoy, Miguel Lozano, Laura Martínez-Mateu, Felipe Atienza, Javier Saiz, and Rafael Sebastian. Non-invasive localization of atrial ectopic beats by using simulated body surface p-wave integral maps. PloS one, 12(7):e0181263, 2017.

Jacob Fish and Nan Hu. Multiscale modeling of femur fracture. International Journal for Numerical Methods in Engineering, 111(1):3–25, 2017.

Kathleen M Friel, Peter Lee, Disha Gupta, Hsing-Ching Kuo, Ana RP Smorenburg, and Dylan J Edwards. Combined transcranial direct current stimulation and upper extremity robotic therapy improves upper extremity function in an adult with cerebral palsy: A pilot study. Brain Stimulation: Basic, Translational, and Clinical Research in Neuromodulation, 10(1):e13, 2017.

Nicolas Gerber, Mauricio Reyes, Livia Barazzetti, Hans Martin Kjer, Sergio Vera, Martin Stauber, Pavel Mistrik, Mario Ceresa, Nerea Mangado, Wilhelm Wimmer, et al. A multiscale imaging and modelling dataset of the human inner ear. Scientific data, 4(1):1–12, 2017.

EN Goodyer, F Muller, Markus Hess, Karthikeyan Kandan, and Farukh Farukh. Conic deformation of the subglottic mucosa and its impact on the aerodynamics of the airflow over the vocal folds. PEVOC 12, 2017.

Eric Goodyer, Frank Müller, Markus Hess, Karthikeyan Kandan, and Farukh Farukh. Biomechanical flow amplification arising from the variable deformation of the subglottic mucosa. Journal of Voice, 31(6):669–674, 2017.

S Govender and N Jeffrey. Augmented 3d reconstruction of the knee. International Journal of Surgery, 47:S16, 2017.

Kabilar Gunalan, Ashutosh Chaturvedi, Bryan Howell, Yuval Duchin, Scott F Lempka, Remi Patriat, Guillermo Sapiro, Noam Harel, and Cameron C McIntyre. Creating and parameterizing patient-specific deep brain stimulation pathway-activation models using the hyperdirect pathway as an example. PloS one, 12(4):e0176132, 2017.

Jana Hornova, V Kralj-Iglič, DR Pedersen, and M Daniel. Effect of patient-specific model scaling on hip joint reaction force in one-legged stance–study of 356 hips. Acta of bioengineering and biomechanics, 19(4), 2017.

Bryan Howell and Cameron C McIntyre. Role of soft-tissue heterogeneity in computational models of deep brain stimulation. Brain stimulation, 10(1):46–50, 2017.

Mohammad Taghi Karimi, Mohammad Hossein Ebrahimi, Ali Mohammadi, and Anthony McGarry. Evaluation of the influences of various force magnitudes and configurations on scoliotic curve correction using finite element analysis. Australasian physical & engineering sciences in medicine, 40(1):231–236, 2017.

Min-Joo Kim, Seu-Ran Lee, Min-Young Lee, Jason W Sohn, Hyong Geon Yun, Joon Yong Choi, Sang Won Jeon, and Tae Suk Suh. Characterization of 3d printing techniques: Toward patient specific quality assurance spine-shaped phantom for stereotactic body radiation therapy. PloS one, 12(5):e0176227, 2017.

William J Kowalski, Fangping Yuan, Takeichiro Nakane, Hidetoshi Masumoto, Marc Dwenger, Fei Ye, Joseph P Tinney, and Bradley B Keller. Quantification of cardiomyocyte alignment from threedimensional (3d) confocal microscopy of engineered tissue. Microscopy and Microanalysis, 23(4):826– 842, 2017.

Tanja Kurzendorfer, Christoph Forman, Michaela Schmidt, Christoph Tillmanns, Andreas Maier, and Alexander Brost. Fully automatic segmentation of left ventricular anatomy in 3-d lge-mri. Computerized Medical Imaging and Graphics, 59:13–27, 2017.

Hyung-Min Lee, Bryan Howell, Warren M Grill, and Maysam Ghovanloo. Stimulation efficiency with decaying exponential waveforms in a wirelessly powered switched-capacitor discharge stimulation system. IEEE Transactions on Biomedical Engineering, 65(5):1095–1106, 2017.

Chao Ma, Gongning Luo, and Kuanquan Wang. A combined random forests and active contour model approach for fully automatic segmentation of the left atrium in volumetric mri. BioMed research international, 2017, 2017.

Chi Ma, Baiyu Chen, Lifeng Yu, Chi Wan Koo, Shuai Leng, Edwin A Takahashi, Joel G Fletcher, David L Levin, Ronald S Kuzo, Lyndsay D Viers, et al. Evaluation of a projection-domain lung nodule insertion technique in thoracic computed tomography. Journal of Medical Imaging, 4(1):013510, 2017.

Mike Meyer, Nick Polys, Humza Yaqoob, Linda Hinnov, and Shuhai Xiao. Beyond the stony veil: Reconstructing the earth’s earliest large animal traces via computed tomography x-ray imaging. Precambrian Research, 298:341–350, 2017.

Michael Michalski, Martin Rieth, Andreas Kempf, and Jens Krüger. Coflavis: A visualization system for pulverized coal flames. Computing in Science & Engineering, 19(6):72–78, 2017.

Juan-Carlos G Muñiz. Postprocessing: Software and technique options. In Rapid Prototyping in Cardiac Disease, pages 31–40. Springer, 2017.

Katariina AH Myller, Mikael J Turunen, Juuso TJ Honkanen, Sami P Väänänen, Jarkko T Iivarinen, Jari Salo, Jukka S Jurvelin, and Juha Töyräs. In vivo contrast-enhanced cone beam ct provides quantitative information on articular cartilage and subchondral bone. Annals of biomedical engineering, 45(3):811– 818, 2017.

K Nicol, J Schefflein, J Borrello, N Swinburne, R Patel, N Tabori, E Kim, F Nowakowski, R Lookstein, A Costa, et al. 3d printing of a cirrhotic liver with parenchymal translucency and highlighted portal and hepatic veins for pre-tips planning. Journal of Vascular and Interventional Radiology, 2(28):S233, 2017.

Farhad Pashakhanloo, Daniel A Herzka, Susumu Mori, Muz Zviman, Henry Halperin, Neville Gai, David A Bluemke, Natalia A Trayanova, and Elliot R McVeigh. Submillimeter diffusion tensor imaging and late gadolinium enhancement cardiovascular magnetic resonance of chronic myocardial infarction. Journal of Cardiovascular Magnetic Resonance, 19(1):1–14, 2017.

Bruno Paun, Bart Bijnens, Tinen Iles, Paul A Iaizzo, and Constantine Butakoff. Patient independent representation of the detailed cardiac ventricular anatomy. Medical image analysis, 35:270–287, 2017.

S Prattley, M Fong, R Walker, and S Cheung. Maintenance intravenous fluid and electrolyte prescription for surgical patients: Comparison to nice cg174 guidance. International Journal of Surgery, 47:S16, 2017.

Sundaresh Ram, Forest Danford, Stephen Howerton, Jeffrey J Rodr´ıguez, and Jonathan P Vande Geest. Three-dimensional segmentation of the ex-vivo anterior lamina cribrosa from second-harmonic imaging microscopy. IEEE Transactions on Biomedical Engineering, 65(7):1617–1629, 2017.

Marthony Robins, Justin Solomon, Jocelyn Hoye, Taylor Smith, Lukas Ebner, and Ehsan Samei. Interalgorithm lesion volumetry comparison of real and 3d simulated lung lesions in ct. In Medical Imaging 2017: Physics of Medical Imaging, volume 10132, page 101321S. International Society for Optics and Photonics, 2017.

CS Rosa, TLD Ferreira, G Laurienzo, PH Braz-Silva, and Costa ALF Nahá. Implementaçáo de modelos 3d no ensino de radiologia odontologica. Rev Assoc Paul Cir Dent, pages 286–90, 2017.

Silvia Ruiz-España and David Moratal. Oncospineseg: A software tool for a manual segmentation of computed tomography of the spine on cancer patients. Computed Tomography: Advanced Applications, page 83, 2017.

NI Soomro and SM Bakhtiar. Image-based modeling and precision medicine. In Progress and Challenges in Precision Medicine, pages 141–170. Academic Press, 2017.

Daniel J Tward, Chelsea S Sicat, Timothy Brown, Arnold Bakker, Michela Gallagher, Marilyn Albert, Michael Miller, Alzheimer’s Disease Neuroimaging Initiative, et al. Entorhinal and transentorhinal atrophy in mild cognitive impairment using longitudinal diffeomorphometry. Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring, 9:41–50, 2017.

Laura Dubreuil Vall, Mar Cortes, Dylan Edwards, Giulio Ruffini, and David Putrino. Eeg recordings during sham control transcranial direct current stimulation protocol. Brain Stimulation: Basic, Translational, and Clinical Research in Neuromodulation, 10(1):e13, 2017.

Marta Varela, Ross Morgan, Adeline Theron, Desmond Dillon-Murphy, Henry Chubb, John Whitaker, Markus Henningsson, Paul Aljabar, Tobias Schaeffter, Christoph Kolbitsch, et al. Novel mri technique enables non-invasive measurement of atrial wall thickness. IEEE transactions on medical imaging, 36(8):1607–1614, 2017.

M Walton, M Hughes, and M Shipston. Identifying a suitable structural substarte for a post-operative implant aimed at detecting and treating recurrent glioblastoma multiforme. International Journal of Surgery, 47:S15–S16, 2017.

John Whitaker, Sandeep Panikker, Thomas Fastl, Cesare Corrado, Renu Virmani, Robert Kutys, Eric Lim, Mark O’Neill, Ed Nicol, Steven Niederer, et al. Cardiac ct assessment of tissue thickness at the ostium of the left atrial appendage predicts acute success of radiofrequency ablation. Pacing and Clinical Electrophysiology, 40(11):1218–1226, 2017.

Steven E Williams, Nick WF Linton, Steven Niederer, and Mark D O’Neill. Simultaneous display of multiple three-dimensional electrophysiological datasets (dot mapping). Ep Europace, 19(10):1743– 1749, 2017.

Haoming Xu, Michael A Marchetti, Stephen W Dusza, Esther Chung, Maira Fonseca, Alon Scope, Alan C Geller, Marilyn Bishop, Ashfaq A Marghoob, and Allan C Halpern. Factors in early adolescence associated with a mole-prone phenotype in late adolescence. JAMA dermatology, 153(10):990–998, 2017.

Xiaohui Zhang, Austin Bohner, Sai Bhuvanagiri, Hironori Uehara, Arun Kumar Upadhyay, Lyska L Emerson, Sailaja Bondalapati, Santosh Kumar Muddana, Daniel Fang, Miaoling Li, et al. Targeted intraceptor nanoparticle for neovascular macular degeneration: preclinical dose optimization and toxicology assessment. Molecular Therapy, 25(7):1606–1615, 2017.

Yuese Zheng, Justin Solomon, Kingshuk Choudhury, Daniele Marin, and Ehsan Samei. Accuracy and variability of texture-based radiomics features of lung lesions across ct imaging conditions. In Medical Imaging 2017: Physics of Medical Imaging, volume 10132, page 101325F. International Society for Optics and Photonics, 2017.

 

2016

Purbasha Garai, Ryan GL Koh, Martin Schuettler, Thomas Stieglitz, and José Zariffa. Influence of anatomical detail and tissue conductivity variations in simulations of multi-contact nerve cuff recordings. IEEE Transactions on Neural Systems and Rehabilitation Engineering, 25(9):1653--1662, 2016.

Mikko S Venäläinen, Mika E Mononen, Jari Salo, Lasse P Räsänen, Jukka S Jurvelin, Juha Töyräs, Tuomas Virén, and Rami K Korhonen. Quantitative evaluation of the mechanical risks caused by focal cartilage defects in the knee. Scientific reports, 6(1):1--11, 2016.

Justin Solomon, Alexandre Ba, François Bochud, and Ehsan Samei. Comparison of low-contrast detectability between two ct reconstruction algorithms using voxel-based 3d printed textured phantoms. Medical physics, 43(12):6497--6506, 2016.

Jacob B Brandenburg, Ashley L Kapron, James D Wylie, Brandon G Wilkinson, Travis G Maak, Cristian D Gonzalez, and Stephen K Aoki. The functional and structural outcomes of arthroscopic iliopsoas release. The American journal of sports medicine, 44(5):1286--1291, 2016.

Hyeon Seo, Donghyeon Kim, and Sung Chan Jun. Effect of anatomically realistic full-head model on activation of cortical neurons in subdural cortical stimulation—a computational study. Scientific reports, 6(1):1--12, 2016.

B Michaud, M Jackson, Anton Arndt, A Lundberg, and M Begon. Determining in vivo sternoclavicular, acromioclavicular and glenohumeral joint centre locations from skin markers, ct-scans and intracortical pins: A comparison study. Medical engineering & physics, 38(3):290--296, 2016.

Desmond Dillon-Murphy, Alia Noorani, David Nordsletten, and C Alberto Figueroa. Multi-modality image-based computational analysis of haemodynamics in aortic dissection. Biomechanics and modeling in mechanobiology, 15(4):857--876, 2016.

Thomas A Püschel and William I Sellers. Standing on the shoulders of apes: analyzing the form and function of the hominoid scapula using geometric morphometrics and finite element analysis. American journal of physical anthropology, 159(2):325--341, 2016.

Amy M Balanoff, GS Bever, Matthew W Colbert, Julia A Clarke, Daniel J Field, Paul M Gignac, Daniel T Ksepka, Ryan C Ridgely, N Adam Smith, Christopher R Torres, et al. Best practices for digitally constructing endocranial casts: examples from birds and their dinosaurian relatives. Journal of Anatomy, 229(2):173--190, 2016.

Keegan M Melstrom, Michael D D'emic, Daniel Chure, and Jeffrey A Wilson. A juvenile sauropod dinosaur from the late jurassic of utah, usa, presents further evidence of an avian style air-sac system. Journal of Vertebrate Paleontology, 36(4):e1111898, 2016.

Markus Jehl, Kirill Aristovich, Mayo Faulkner, and David Holder. Are patient specific meshes required for eit head imaging? Physiological measurement, 37(6):879, 2016.

Kivanc Kose, Christi Alessi-Fox, Melissa Gill, Jennifer G Dy, Dana H Brooks, and Milind Rajadhyaksha. A machine learning method for identifying morphological patterns in reflectance confocal microscopy mosaics of melanocytic skin lesions in-vivo. In Photonic Therapeutics and Diagnostics XII, volume 9689, page 968908. International Society for Optics and Photonics, 2016.

K Matusik, D Duke, A Swantek, C Powell, and A Kastengren. High resolution x-ray tomography of injection nozzles. In Proceedings of the ILASS-Americas 27th Annual Conference on Liquid Atomization and Spray Systems, Dearborn, MI, May, 2016.

Apollon Zygomalas, Dionissios Karavias, Dimitrios Koutsouris, Ioannis Maroulis, Dimitrios D Karavias, Konstantinos Giokas, and Vasileios Megalooikonomou. Computer-assisted liver tumor surgery using a novel semiautomatic and a hybrid semiautomatic segmentation algorithm. Medical & biological engineering & computing, 54(5):711--721, 2016.

Pier Francesco Fabbri, Daniele Panetta, Lucia Sarti, Fabio Martini, Piero A Salvadori, Davide Caramella, Mariaelena Fedi, and Stefano Benazzi. Middle paleolithic human deciduous incisor from grotta del cavallo, italy. American journal of physical anthropology, 161(3):506--512, 2016.

Charlotte A Brassey, Thomas G O’Mahoney, Andrew C Kitchener, Phillip L Manning, and William I Sellers. Convex-hull mass estimates of the dodo (raphus cucullatus): application of a ct-based mass estimation technique. PeerJ, 4:e1432, 2016.

Fabien Dal Maso, Yoann Blache, Maxime Raison, Arne Lundberg, and Mickaël Begon. Glenohumeral joint kinematics measured by intracortical pins, reflective markers, and computed tomography: A novel technique to assess acromiohumeral distance. Journal of Electromyography and Kinesiology, 29:4--11, 2016.

Stephan Lau, Daniel Güllmar, Lars Flemming, David B Grayden, Mark J Cook, Carsten H Wolters, and Jens Haueisen. Skull defects in finite element head models for source reconstruction from magnetoencephalography signals. Frontiers in neuroscience, 10:141, 2016.

Chung Chan, Hui Liu, Yariv Grobshtein, Mitchel R Stacy, Albert J Sinusas, and Chi Liu. Noise suppressed partial volume correction for cardiac spect/ct. Medical physics, 43(9):5225--5239, 2016.

Younghoon Shin and Hyuk-Sang Kwon. Mesh-based monte carlo method for fibre-optic optogenetic neural stimulation with direct photon flux recording strategy. Physics in Medicine & Biology, 61(6):2265, 2016.

Kowther Hassan, Joseph C Dort, Garnette R Sutherland, and Sonny Chan. Evaluation of software tools for segmentation of temporal bone anatomy. In MMVR, pages 130--133, 2016.

Julie Arnaud, Carlo Peretto, Daniele Panetta, Maria Tripodi, Federica Fontana, Marta Arzarello, Ursula Thun Hohenstein, Claudio Berto, Benedetto Sala, Gregorio Oxilia, et al. A reexamination of the middle paleolithic human remains from riparo tagliente, italy. Quaternary International, 425:437--444, 2016.

Bowei Zhou and Li Chen. Atlas-based semi-automatic kidney tumor detection and segmentation in ct images. In 2016 9th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI), pages 1397--1401. IEEE, 2016.

Kuanquan Wang and Chao Ma. A robust statistics driven volume-scalable active contour for segmenting anatomical structures in volumetric medical images with complex conditions. Biomedical engineering online, 15(1):1--26, 2016.

Justin Solomon, Alexandre Ba, Andrew Diao, Joseph Lo, Elianna Bier, François Bochud, Michael Gehm, and Ehsan Samei. Design, fabrication, and implementation of voxel-based 3d printed textured phantoms for task-based image quality assessment in ct. In Medical Imaging 2016: Physics of Medical Imaging, volume 9783, page 978328. International Society for Optics and Photonics, 2016.

Andra Chincisan, Karelia Tecante, Matthias Becker, Nadia Magnenat-Thalmann, Christof Hurschler, and Hon Fai Choi. A computational approach to calculate personalized pennation angle based on mri: effect on motion analysis. International journal of computer assisted radiology and surgery, 11(5):683--693, 2016.

Vijay N Permeswaran, Jessica E Goetz, M James Rudert, Carolyn M Hettrich, and Donald D Anderson. Cadaveric validation of a finite element modeling approach for studying scapular notching in reverse shoulder arthroplasty. Journal of biomechanics, 49(13):3069--3073, 2016.

Jessica S Coogan, W Loren Francis, Travis D Eliason, Todd L Bredbenner, Brian D Stemper, Narayan Yoganandan, Frank A Pintar, and Daniel P Nicolella. Finite element study of a lumbar intervertebral disc nucleus replacement device. Frontiers in bioengineering and biotechnology, 4:93, 2016.

Baiyu Chen, Chi Ma, Shuai Leng, Jeff L Fidler, Shannon P Sheedy, Cynthia H McCollough, Joel G Fletcher, and Lifeng Yu. Validation of a projection-domain insertion of liver lesions into ct images. Academic radiology, 23(10):1221--1229, 2016.

Kirsten E Stoner, Kingsley O Abode-Iyamah, Nicole M Grosland, and Matthew A Howard III. Volume of brain herniation in patients with ischemic stroke after decompressive craniectomy. World neurosurgery, 96:101--106, 2016.

Nan Hu. Advances in Multiscale Methods with Applications in Optimization, Uncertainty Quantification and Biomechanics. Columbia University, 2016.

Purbasha Garai. A Validated Peripheral Nerve Model for the Simulation of Multicontact Nerve Cuff Recordings. PhD thesis, 2016.

James Robertson, Emma Hill, Andrew A Plumb, Simon Choong, Simeon J West, and Daniil I Nikitichev. 3d printed ultrasound phantoms for clinical training. In NIP & Digital Fabrication Conference, volume 2016, pages 410--415. Society for Imaging Science and Technology, 2016.

Xianzeng Zhang, Nenrong Liu, Peng Un Mak, Sio Hang Pun, Mang I Vai, Omid Masihzadeh, Malik Y Kahook, Tim C Lei, and David A Ammar. Three-dimensional segmentation and quantitative measurement of the aqueous outflow system of intact mouse eyes based on spectral two-photon microscopy techniques. Investigative ophthalmology & visual science, 57(7):3159--3167, 2016.

Chunhua Deng and Xiaolong Zhang. Automatic segmentation of the left atrium from mr images via semantic information. In 2016 IEEE International Conference on Systems, Man, and Cybernetics (SMC), pages 003312--003316. IEEE, 2016.

Helton H Biscaro, Hellyan Oliveira, Leila CC Bergamasco, and Fátima LS Nunes. A new descriptor for retrieving 3d objects applied in congestive heart failure diagnosis. In 2016 29th SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI), pages 120--127. IEEE, 2016.

Matthias Becker. Efficient extraction of musculoskeletal structures from multi-channel MR images. PhD thesis, University of Geneva, 2016.

Jackson Nelson Mitchell. Application of micro-CT and elliptic Fourier analysis on molar outline shape for group discrimination of notoungulates. PhD thesis, UC Santa Barbara, 2016.

Jessica Marie Fritz. Injury risk assessment of the femur in children with osteogenesis imperfecta. 2016.

Luchun Lin, Baoping Shi, and Ping An. Multiwavelet prestack kirchhoff migration. Geophysics, 81(3):S79--S85, 2016.

Yu Andy Huang. Computational Models of Current Flow in Transcranial Electrical Stimulation. PhD thesis, The City College of New York, 2016.

MARCH SATURDAY. 2016 aapm spring clinical meeting-abstracts. Journal of Applied Clinical Medical Physics, 17(3), 2016.

Salo Jari, Töyräs Juha, Virén Tuomas, et al. Quantitative evaluation of the mechanical risks caused by focal cartilage defects in the knee. 2016.

Alican Bozkurt, Kivanc Kose, Christi A Fox, Jennifer Dy, Dana H Brooks, and Milind Rajadhyaksha. An unsupervised machine learning method for delineating stratum corneum in reflectance confocal microscopy stacks of human skin in vivo. In Photonic Therapeutics and Diagnostics XII, volume 9689, page 96890Z. International Society for Optics and Photonics, 2016.

Paul S Holcomb, Michael Morehead, Gianfranco Doretto, Peter Chen, Stuart Berg, Stephen Plaza, and George Spirou. Rapid and semi-automated extraction of neuronal cell bodies and nuclei from electron microscopy image stacks. In Auditory and Vestibular Research, pages 277--290. Humana Press, New York, NY, 2016.

Michael Tradewell, Jaron Olsoe, Bret Andersen, Ashish Singal, and Rumi Faizer. Transcatheter endovascular aortic repair. Journal of Medical Devices, 10(3), 2016.

Cong-Bo Phan, Kang-Min Sohn, Joon-Ho Wang, and Seungbum Koo. Automatic computation of bernard quadrant in the distal femur. In 2016 International Conference on Biomedical Engineering (BME-HUST), pages 103--108. IEEE, 2016.

Yuese Zheng. Design, Fabrication, and Implementation of Voxel-Based 3D Printed Heterogeneous. PhD thesis, Duke University, 2016.

Thomas A Metzger. Experimental and computational investigation of bone marrow mechanobiology. University of Notre Dame, 2016.

 

2014

Gustavo De-Deus, Emmanuel João Nogueira Leal Silva, Juliana Marins, Erick Souza, Aline de Almeida Neves, Felipe Gonçalves Belladonna, Haimon Alves, Ricardo Tadeu Lopes, Marco Aurélio Versiani,
"Lack of Causal Relationship between Dentinal Microcracks and Root Canal Preparation with Reciprocation Systems"
Journal of Endodontics, Available online 21 April 2014
DOI: 10.1016/j.joen.2014.02.019
http://www.sciencedirect.com/science/article/pii/S0099239914001952

Suresh I. Prajapati, Lisa Nevell, Charles Keller
"Microscopic Computed Tomography-Based Skeletal Phenotyping for Genetic Model Organisms"
Mouse Molecular Embryology: Methods in Molecular Biology, Volume 1092, 2014, pp 221-226
DOI:10.1007/978-1-60327-292-6_14
http://link.springer.com/protocol/10.1007/978-1-60327-292-6_14

Valentina Giuffra, Daniele Panetta, Piero A. Salvadori and Gino Fornaciari
"A historical case of amelogenesis imperfecta: Giovanna of Austria, Grand Duchess of Tuscany (1547–1578)"
European Journal of Oral Sciences, Volume 122, Issue 1, pages 1–6, February 2014
DOI: 10.1111/eos.12097
http://onlinelibrary.wiley.com/doi/10.1111/eos.12097/full

David García Juan, Bénédicte M. A. Delattre, Sara Trombella, Sean Lynch, Matthias Becker, Hon Fai Choi, Osman Ratib
"Open framework for management and processing of multi-modality and multidimensional imaging data for analysis and modeling muscular function"
Proc. SPIE 9036, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling, 90361W (March 12, 2014); doi:10.1117/12.2042853
http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=1849131

Gustavo De-Deus, Juliana Marins, Aline de Almeida Neves, Claudia Reis, Sandra Fidel, Marco A. Versiani, Haimon Alves, Ricardo Tadeu Lopes, Sidnei Paciornik.
"Assessing Accumulated Hard-tissue Debris Using Micro–computed Tomography and Free Software for Image Processing and Analysis"
Journal of Endodontics, Volume 40, Issue 2, February 2014, Pages 271–276
http://dx.doi.org/10.1016/j.joen.2013.07.025

Todd L. Bredbenner, Robert L. Mason, Lorena M. Havill, Eric S. Orwoll, Daniel P. Nicolella
"Fracture Risk Predictions Based on Statistical Shape and Density Modeling of the Proximal Femur"
Journal of Bone and Mineral Research, 2014.
DOI: 10.1002/jbmr.2241
http://onlinelibrary.wiley.com/doi/10.1002/jbmr.2241/abstract

Gregory D Scott, Emily D Blum, Allison D Fryer, and David B Jacoby
"Tissue Optical Clearing, 3D Imaging, and Computer Morphometry in Whole Mouse Lungs and Human Airways"
American Journal of Respiratory Cell and Molecular Biology
http://www.atsjournals.org/doi/abs/10.1165/rcmb.2013-0284OC#.Uz7gX1f6-5J

Sergio Vasquez, Neha Shah David Weinstein. "Methods for Evaluating Quantifying Fibrosis in Lung Tissue" United States Patent Application 20140065663, 2014.
http://www.freepatentsonline.com/20140065663.pdf

2013

Leila C. C. Bergamasco, Fátima L. S. Nunes. "Applying Distance Histogram to retrieve 3D cardiac medical models" AMIA Annual Symposium Proceedings. Published online Nov. 16, 2013.
PMCID: PMC3900133

Ling Luo, Hironori Uehara, Xiaohui Zhang, Subrata K Das, Thomas Olsen, Derick Holt, Jacquelyn M Simonis, Kyle Jackman, Nirbhai Singh, Tadashi R Miya, Wei Huang, Faisal Ahmed, Ana Bastos-Carvalho, Yun Zheng Le, Christina Mamalis, Vince A Chiodo, William W Hauswirth, Judit Baffi, Pedro M Lacal, Angela Orecchia, Napoleone Ferrara, Guangping Gao, Kim Young-hee, Yingbin Fu, Leah Owen, Romulo Albuquerque, Wolfgang Baehr, Kirk Thomas, Dean Y Li, Kakarla V Chalam, Masabumi Shibuya, Salvatore Grisanti, David J Wilson, Jayakrishna Ambati, Balamurali K Ambati
"Photoreceptor avascular privilege is shielded by soluble VEGF receptor-1"
Cell biology / Human biology and medicine, June 18, 2013.
DOI: 10.7554/eLife.00324
http://elife.elifesciences.org/content/2/e00324
 

Valentina Giuffra, Daniele Panetta, Piero A. Salvadori, Gino Fornaciari
"A historical case of amelogenesis imperfecta: Giovanna of Austria, Grand Duchess of Tuscany (1547–1578)"
DOI: 10.1111/eos.12097
http://onlinelibrary.wiley.com/doi/10.1111/eos.12097/full

Jinkoo Kim, Sanath Kumar, Chang Liu, Hualiang Zhong, Deepak Pradhan, Mira Shah, Richard Cattaneo, Raphael Yechieli, Jared R Robbins, Mohamed A Elshaikh and Indrin J Chetty
"A novel approach for establishing benchmark CBCT/CT deformable image registrations in prostate cancer radiotherapy"
Physics in Medicine and Biology Volume 58 Number 22, 2013.
doi:10.1088/0031-9155/58/22/8077
http://iopscience.iop.org/0031-9155/58/22/8077

Nicholas F. Polys, Sebastian Ullrich, Daniel Evestedt, Andrew D. Wood, Michael Aratow. "A Fresh Look at Immersive Volume Rendering: Challenges and Capabilities" 2013. http://www.andrewdwood.com/pubs/WIVI13-tmp.pdf

Jesse M. Klostranec, Tina Ehtiati, Swati Rao, Martin G. Radvany.
"Comparison of Aortic Arch and Intravenous Contrast Injection Techniques for C-arm Cone Beam CT: Implications for Cerebral Perfusion Imaging in the Angiography Suite"
Academic Radiology, Volume 20, Issue 4, April 2013, Pages 509–518
DOI: 10.1016/j.acra.2012.10.008
http://www.sciencedirect.com/science/article/pii/S1076633212005491

Mohammad Shenasa, Gerhard Hindricks, Martin Borggrefe, Günter Breithardt, Mark E. Josephson.
"Personalized Electrophysiological Modeling of the Human Atrium" Chapter 16 of Cardiac Mapping 4th Edition.
This edition first published 2013 © 1993, 2009, 2013 Blackwell Publishing Ltd.
DOI: 10.1002/9781118481585.ch16
http://onlinelibrary.wiley.com/doi/10.1002/9781118481585.ch16/summary

"Automatic Segmentation of the Left Atrium from MR Images Via Variational Region Growing with a Moments-based Shape Prior" Zhu, L. ; Gao, Y. ; Yezzi, A. ; Tannenbaum, A., Image Processing, IEEE Transactions on  (Volume:PP ,  Issue: 99 )
http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6600944&tag=1
DOI: 10.1109/TIP.2013.2282049

2012

Christoph Böcklin, Dirk Baumann, Emanuela Keller, Jürg Fröhlich.
"Determining light distribution in human head using 3D Monte Carlo simulations"
Optical Interactions with Tissue and Cells XXIII, edited by E. Duco Jansen, Robert J. Thomas,
Proc. of SPIE Vol. 8221, 822117 2012
doi: 10.1117/12.909155
http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=1344352

Rebecca A.B. Burton, Jürgen E. Schneider, Martin J. Bishop, Patrick W. Hales, Christian Bollensdorff, Matthew D. Robson, Kelvin C.K. Wong, John Morris, T. Alexander Quinn, Peter Kohl
"Microscopic magnetic resonance imaging reveals high prevalence of third coronary artery in human and rabbit heart"
Europace (2012) 14 (suppl 5): v73-v81.
doi: 10.1093/europace/eus276
http://europace.oxfordjournals.org/content/14/suppl_5/v73.short

Yu-Chi Hu, Michael D. Grossberg, Abraham Wu, Nadeem Riaz, Carmen Perez, Gig S. Mageras
Interactive semiautomatic contour delineation using statistical conditional random fields framework
Med. Phys. 39, 4547 (12 pages), 2012.
DOI: 10.1118/1.4728979
http://online.medphys.org/resource/1/mphya6/v39/i7/p4547_s1?view=fulltext

John Darrell Van Horn, Andrei Irimia, Carinna M. Torgerson, Micah C. Chambers, Ron Kikinis, Arthur W. Toga
Mapping Connectivity Damage in the Case of Phineas Gage
PLoS ONE 7(5): e37454. doi:10.1371/journal.pone.0037454
doi:10.1371/journal.pone.0037454
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0037454

Yi Gao, Ron Kikinis, Sylvain Bouix, Martha Shenton, Allen Tannenbaum
A 3D interactive multi-object segmentation tool using local robust statistics driven active contours
Medical Image Analysis, Volume 16, Issue 6, August 2012, Pages 1216–1227
DOI: 10.1016/j.media.2012.06.002
http://www.sciencedirect.com/science/article/pii/S1361841512000837

Stephen H. Gilbert, David Benoist, Alan P. Benson, Ed White, Steven F. Tanner, Arun V. Holden, Halina Dobrzynski, Olivier Bernus, Aleksandra Radjenovic.
"Visualization and quantification of whole rat heart laminar structure using high-spatial resolution contrast-enhanced MRI"
AJP - Heart January 1, 2012 vol. 302 no. 1 H287-H298
doi: 10.1152/ajpheart.00824.2011
http://ajpheart.physiology.org/content/302/1/H287.short

Gormanns P, Reckow S, Poczatek JC, Turck CW, Lechene C (2012)
Segmentation of Multi-Isotope Imaging Mass Spectrometry Data for Semi-Automatic Detection of Regions of Interest. PLoS ONE 7(2): e30576. 2012
doi:10.1371/journal.pone.0030576
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030576

Jamriska, O. and Sykora, D. and Hornung, A.
Cache-efficient graph cuts on structured grids
Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on, pp. 3673--3680
http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6248113

Manuela Kellner, Marko Heidrich, Rebecca Beigel1, Raoul-Amadeus Lorbeer, Lars Knudsen, Tammo Ripken, Alexander Heisterkamp, Heiko Meyer, Mark Philipp Kühnel, Matthias Ochs. "Imaging of the mouse lung with scanning laser optical tomography (SLOT)"
Journal of Applied Physiology, September 15, 2012 vol. 113 no. 6 975-983
DOI: 10.1152/japplphysiol.00026.2012
http://www.jappl.org/content/113/6/975.short

Feng Liu, Ph.D., Beth Erickson, M.D., Cheng Peng, Ph.D., X. Allen Li, Ph.D.
Characterization and Management of Interfractional Anatomic Changes for Pancreatic Cancer Radiotherapy
International Journal of Radiation Oncology*Biology*Physics
Volume 83, Issue 3, 1 July 2012, Pages e423–e429
DOI: 10.1016/j.ijrobp.2011.12.073
http://dx.doi.org/10.1016/j.ijrobp.2011.12.073

Vanessa Raffin-Desjardins
Étalonnage du Test de Compréhension de l'Ambiguïté sur une population de 50 à 80 ans
Mémoire pour le Certificat de capacité d'orthophoniste - 24/07/2012, Fabienne Pelage (Dir.)
http://dumas.ccsd.cnrs.fr/dumas-00730783/

Amber L. Simpson, Prashanth Dumpuri, William R. Jarnagin and Michael I. Miga
Model-Assisted Image-Guided Liver Surgery Using Sparse Intraoperative Data
Soft Tissue Biomechanical Modeling for Computer Assisted Surgery
Studies in Mechanobiology, Tissue Engineering and Biomaterials, 2012, Volume 11, 7-40, DOI: 10.1007/8415_2012_117
http://www.springerlink.com/content/nj66t5624n02348k/

Ross Taylor Sowell
"Modeling Surfaces from Volume Data Using Nonparallel Contours"
Ph.D. thesis in Computer Science at Washington University in St. Louis, 2012.
http://cse.wustl.edu/Research/Lists/Technical%20Reports/Attachments/994/Sowell.pdf

Chih-Ko Yeh, Stephen E Harris, Sumathy Mohan, Diane Horn, Roberto Fajardo, Yong-Hee Patricia Chun, James Jorgensen, Mary MacDougall and Sherry Abboud-Werner
Hyperglycemia and xerostomia are key determinants of tooth decay in type 1 diabetic mice
Laboratory Investigation (2012) 92, 868–882; doi:10.1038/labinvest.2012.60; published online 26 March 2012
doi:10.1038/labinvest.2012.60
http://www.nature.com/labinvest/journal/v92/n6/full/labinvest201260a.html

2011

Muhammad Asif
Long-term Preservation of Three Dimensional Digital Drawings and Maps
Masters Thesis, Luleå University of Technology
Department of Computer Science, Electrical and Space Engineering, December 2011
https://pure.ltu.se/ws/files/36145301/LTU-EX-2012-36139570.pdf

"Characterizing Interfraction Variations and Their Dosimetric Effects in Prostate Cancer Radiotherapy" Cheng Peng, Ph.D., Ergun Ahunbay, Ph.D., Guangpei Chen, Ph.D., Savannah Anderson, B.S., Colleen Lawton, M.D., X. Allen Li, Ph.D. In International Journal of Radiation Oncology * Biology * Physics Volume 79, Issue 3 , Pages 909-914, 1 March 2011

Brad M. Isaacson, Lucille B. Brunker, Amalia A. Brown, James P. Beck, Gregory L. Burns, Roy D. Bloebaum.
An evaluation of electrical stimulation for improving periprosthetic attachment
Journal of Biomedical Materials Research Part B: Applied Biomaterials
Volume 97B, Issue 1, pages 190–200, April 2011
http://onlinelibrary.wiley.com/doi/10.1002/jbm.b.31803/full

Fgf-18 is required for osteogenesis but not angiogenesis during long bone repair Dr. Bjorn Behr, Dr. Michael Sorkin, Miss Alina Manu, Marcus Lehnhardt, Dr. Michael Longaker and Dr. natalina quarto Tissue Engineering Part A, August 2011, 17(15-16): 2061-2069. doi:10.1089/ten.tea.2010.0719.

Stephen H. Gilbert, David Benoist, Alan P. Benson, Ed White, Steven F. Tanner, Arun V. Holden, Halina Dobrzynski, Olivier Bernus, Aleksandra Radjenovic
Visualization and quantification of whole rat heart laminar structure using high-spatial resolution contrast-enhanced MRI
Integrative Cardiovascular Physiology and Pathophysiology, Submitted 19 August 2011. Accepted 7 October 2011.
http://ajpheart.physiology.org/content/302/1/H287.short

"An evaluation of electrical stimulation for improving periprosthetic attachment" BM Isaacson, LB Brunker, AA Brown… - J Biomed Mater Res B Appl Biomater. 2011 Apr;97(1):190-200. doi: 10.1002/jbm.b.31803. Epub 2011 Feb 24. ... Publication History. ... The entire rabbit limb was carefully segmented using thresholding software and compiled into a hierarchical volume conductor model which served as the mesh for FEA (Seg3D version 1.11.0, Scientific Computing and Imaging Institute, Salt Lake City, UT ... http://onlinelibrary.wiley.com/doi/10.1002/jbm.b.31803/full

"A Volumetric Method for Quantifying Atherosclerosis in Mice by Using MicroCT: Comparison to En Face" DJ Lloyd, J Helmering, SA Kaufman, J Turk… - PloS one, 2011 - dx.plos.org ... Image Processing: Seg3D, a segmentation software package from the Scientific Computing and Imaging Institute (SCI, University of Utah, Salt Lake City, UT) was used to semi-automatically label plaques within the aortic arch. PLoS ONE 6(4): e18800. doi:10.1371/journal.pone.0018800
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0018800

Hai-Yen Nguyen,
COMPUTED TOMOGRAPHY FOR THE NON-DESTRUCTIVE IMAGING OF CULTURAL HERITAGE: X-RAY, GAMMA AND NEUTRON SOURCES,
Thesis submitted to the Department of Art in conformity with the requirements for the degree of Master of Art Conservation, Queen's University Kingston, Ontario, Canada (September, 2011)
http://qspace.library.queensu.ca/handle/1974/6713

"Contrast enhanced vessel imaging using microCT" Prajapati SI, Keller C. J Vis Exp. 2011 Jan 27;(47). pii: 2377. doi: 10.3791/2377. The reconstructed microCT data can be used for advanced isosurface, one-dimensional, or two-dimensional transfer function rendering Images using Seg3D image processing software (Seg3D, http://www.sci.utah.edu/cibc/software). ... -- http://www.jove.com/details.php?id=2377

Cheng Peng, Ph.D., Ergun Ahunbay, Ph.D., Guangpei Chen, Ph.D., Savannah Anderson, B.S., Colleen Lawton, M.D., X. Allen Li.
Characterizing Interfraction Variations and Their Dosimetric Effects in Prostate Cancer Radiotherapy
International Journal of Radiation Oncology*Biology*Physics
Volume 79, Issue 3, 1 March 2011, Pages 909–914
http://dx.doi.org/10.1016/j.ijrobp.2010.05.008

Ivo Wolf
Toolkits and Software for Developing Biomedical Image Processing and Analysis Applications
Biomedical Image Processing
Biological and Medical Physics, Biomedical Engineering, 2011, Part 8, 521-544, DOI: 10.1007/978-3-642-15816-2_21
http://www.springerlink.com/content/u540451175002p84/

Huei-Fang Yang and Yoonsuck Choe
Ground Truth Estimation by Maximizing Topological Agreements in Electron Microscopy Data
Advances in Visual Computing
Lecture Notes in Computer Science, 2011, Volume 6938/2011, 371-380, DOI: 10.1007/978-3-642-24028-7_34
http://www.springerlink.com/content/mm36n8354130227t/

Hui Zhao, Junya Azuma, Flora Kalish, Ronald J. Wong, and David K. Stevenson
Maternal Heme Oxygenase 1 Regulates Placental Vasculature Development via Angiogenic Factors in Mice
Biology of Reproduction 85(5):1005-1012. 2011
http://www.bioone.org/doi/abs/10.1095/biolreprod.111.093039

2010

"Atrial Fibrosis Helps Select the Appropriate Patient and Strategy in Catheter Ablation of Atrial Fibrillation: A DE-MRI Guided Approach" N AKOUM, M DACCARETT… - Journal of …, 2010 - Wiley Online Library ...In all images, the epicardial and endocardial LA borders were manually contoured with image display and analysis software in Seg3D (segmentation and processing ... This is in line with other publications suggesting that isolation of PV triggers may be acceptable in paroxysmal ... PubMed Article

Szczepan M. Bilinski, Mariusz K. Jaglarz, Matthew T. Dougherty, Malgorzata Kloc.
Electron microscopy, immunostaining, cytoskeleton visualization, in situ hybridization, and three-dimensional reconstruction of Xenopus oocytes
Methods, Volume 51, Issue 1, May 2010, Pages 11–19
Xenopus Oocytes as an Experimental System
http://dx.doi.org/10.1016/j.ymeth.2009.12.003

Martin J. Bishop, Gernot Plank, Rebecca A. B. Burton, Jürgen E. Schneider, David J. Gavaghan, Vicente Grau, Peter Kohl
Development of an anatomically detailed MRI-derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function
AJP - Heart February 2010 vol. 298 no. 2 H699-H718
http://ajpheart.physiology.org/content/298/2/H699.short

"Integrated approach for the study of anatomical variability in the cardiac Purkinje system: From high resolution MRI to electrophysiology simulation" Bordas, R.; Grau, V.; Burton, R.A.B.; Hales, P.; Schneider, J.E.; Gavaghan, D.; Kohl, P.; Rodriguez, B.; Comput. Lab., Oxford Univ., Oxford, UK In Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE pp. 6793 - 6796, Issue Date: Aug. 31 2010-Sept. 4 2010 PubMed ID: 21095842

Casero, R. ; Burton, R.A.B. ;  Quinn, T.A. ;  Bollensdorff, C. ;  Hales, P. ;  Schneider, J.E. ;  Kohl, P. ;  Grau, V.
Cardiac valve annulus manual segmentation using computer assisted visual feedback in three-dimensional image data
Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE
Page(s): 738 - 741, Aug. 31 2010-Sept. 4 2010
http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5626303

"Towards High-Resolution Cardiac Atlases: Ventricular Anatomy Descriptors for a Standardized Reference Frame" Ramón Casero, Rebecca A. B. Burton, T. Alexander Quinn, Christian Bollensdorff, Patrick Hales, Jürgen E. Schneider, Peter Kohl and Vicente Grau. In Statistical Atlases and Computational Models of the Heart Lecture Notes in Computer Science, 2010, Volume 6364/2010, 75-84, DOI: 10.1007/978-3-642-15835-3_8

P. Kohl R. Casero R.A.B. Burton T.A. Quinn C. Bollensdorff P. Hales J.E. Schneider and V. Grau
Cardiac Valve Annulus Manual Segmentation Using Computer Assisted Visual Feedback in Three-Dimensional Image Data
32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'10)
pp. WeBPo10.7, 2010
http://www.cs.ox.ac.uk/publications/publication3916-abstract.html

Alan Garny, Jonathan Cooper, Peter J. Hunter
Toward a VPH/Physiome ToolKit
Wiley Interdisciplinary Reviews: Systems Biology and Medicine
Volume 2, Issue 2, pages 134–147, March/April 2010
DOI: 10.1002/wsbm.63
http://onlinelibrary.wiley.com/doi/10.1002/wsbm.63/abstract

"Evaluation of the left atrial substrate in patients with lone atrial fibrillation using delayed-enhanced MRI: implications for disease progression and response to catheter" C Mahnkopf, TJ Badger, NS Burgon, M Daccarett… - Heart Rhythm, 2010 - Elsevier This is a PDF file of an unedited manuscript that has been accepted for publication. ... In all DE-MRI images, the epicardial and endocardial LA borders were manually contoured with image display and analysis software in Seg3D (segmentation and processing tool developed by ... PubMed

Anthony F. Purchio, Ali N. Bahadur, Sergio X. Vasquez, Matthew Thomas Masner
Method and Compositions for imaging cartilage and bone
US Patent No. US 2010/0183212 A1, Jul 22, 2010.
http://www.google.com/patents?id=ZGfSAAAAEBAJ&zoom=4&dq=Seg3D&pg=PA1#v=onepage&q=Seg3D&f=false

"Image-based models of cardiac structure in health and disease" F Vadakkumpadan, H Arevalo… - Wiley …, 2010 - Wiley Online Library ... Publication History. ... In the next step, a level set method is applied to the image of the myocardium using the Seg3D software system (http://software.sci.utah.edu/SCIRun Docs/index.php/CIBC:Seg3D), to separate the larger coronary arteries and interlaminar clefts. ... -- http://www.ncbi.nlm.nih.gov/pubmed/20582162 HTML from nih.gov

"Characterizing Interfraction Variations and Their Dosimetric Effects in Prostate Cancer Radiotherapy" C Peng, E Ahunbay, G Chen, S Anderson… - International Journal of …, 2010 - Elsevier ... were copied to the daily CT scan. The planning contours and the contours on the daily CT scan (daily contours) were compared using a software tool (Seg3D, Siemens, Concord, CA). The parameters such as COM distance, volume ... -- PubMed Article

 

P. Š ovíc(ek, Š. Havránek, J. Šimek, M. Zborník, M. Mlc(ek and O. Kittnar
Isopotential ECG Imaging Correctly Identified Endocardial Ectopic Activation Site in the Case of Arrhythmia from Right Ventricular Outflow Tract
World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany
IFMBE Proceedings, 2010, Volume 25/4, 1965-1968, DOI: 10.1007/978-3-642-03882-2_522
http://www.springerlink.com/content/n462574710478j58/

Fijoy Vadakkumpadan, Hermenegild Arevalo, Anton J. Prassl, Junjie Chen, Ferdinand Kickinger, Peter Kohl, Gernot Plank, Natalia Trayanova
Image-based models of cardiac structure in health and disease
Wiley Interdisciplinary Reviews: Systems Biology and Medicine
Volume 2, Issue 4, pages 489–506, July/August 2010
DOI: 10.1002/wsbm.76
http://onlinelibrary.wiley.com/doi/10.1002/wsbm.76/abstract

2009

Martin J. Bishop, Patrick Hales, Gernot Plank, David J. Gavaghan, Jürgen Scheider and Vicente Grau
Comparison of Rule-Based and DTMRI-Derived Fibre Architecture in a Whole Rat Ventricular Computational Model
Functional Imaging and Modeling of the Heart, Lecture Notes in Computer Science, 2009, Volume 5528/2009, 87-96, DOI: 10.1007/978-3-642-01932-6_10
http://www.springerlink.com/content/m07x91314vp1q862/

Martin J. Bishop, Gernot Plank, Rebecca A. B. Burton, Jürgen E. Schneider, David J. Gavaghan, Vicente Grau, and Peter Kohl. "Development of an anatomically detailed MRI-derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function" Am J Physiol Heart Circ Physiol 298: H699-H718, 2010. First published November 20, 2009; doi:10.1152/ajpheart.00606.2009 [2]

D. Maleike, M. Nolden, H.-P. Meinzer and I. Wolf. "Interactive Segmentation Framework of the Medical Imaging Interaction Toolkit" In Computer Methods and Programs in Biomedicine, Volume 96, Issue 1, October 2009, Pages 72-83. [3]

P. Štovícek, Š. Havránek, J. Šimek, M. Zborník, M. Mlcek and O. Kittnar "Isopotential ECG Imaging Correctly Identified Endocardial Ectopic Activation Site in the Case of Arrhythmia from Right Ventricular Outflow Tract" In IFMBE Proceedings, World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany Vol. 25/4 Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics, Jan 1, 2010. [4]

2008

MO Bernabeu, MJ Bishop, J Pitt-Francis, DJ Gavaghan, V Grau, B Rodr´ýguez. "High Performance Computer Simulations for the Study of Biological Function in 3D Heart Models Incorporating Fibre Orientation and Realistic Geometry at Para-Cellular Resolution" In Computers in Cardiology, Vol. 35 pp. 721-724, 2008. [5]

Martin J. Bishop, Patrick Hales, Gernot Plank, David J. Gavaghan, Jürgen Scheider and Vicente Grau. "Comparison of Rule-Based and DTMRI-Derived Fibre Architecture in a Whole Rat Ventricular Computational Model" LCNS, Functional Imaging and Modeling of the Heart, Vol. 5528/2009, pp. 87--96, 2009. [6]

Christian Kurz, Matthias Straka. "Joint Image Registration and Segmentation Based on the paper by Baba Vermuri and Yunmei Chen [3]" Institute for Computer Graphics and Vision, MGVG SS 2008. ** May not be refrence to our software. [7]

2007

Philippe P. Pébay, David Thompson, Jason Shepherd, Patrick Knupp, Curtis Lisle, Vincent A. Magnotta, Nicole M. Grosland. "New Applications of the Verdict Library for Standardized Mesh Verification Pre, Post, and End-to-End Processing" In Proceedings of the 16th International Meshing Roundtable, pp. 535--552, Sept. 26, 2007. [8]

Unknown Publication status or year

"Computer Assisted Manual Segmentation With Visual Feedback of the Four Main Cardiac Valves' Annula in Rat [PDF] from ox.ac.uk R Casero, RAB Burton, TA Quinn, P Hales… - physiol.ox.ac.uk ... We propose a new Spline Tool for the open source software platform Seg3D, that is fast and improves spatial coherence by providing visual feedback of the segmentation in real time. ... Seg3D is an open source (MIT licence) software application developed in C++. ...