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Outside Pubs Referencing Seg3D

Last update on 5/1/2014

NOTE: The following references turned up as hits while searching relevant terms according to a search engine, however it was not always possible to verify the validity of each reference. Anything potentially relevant was included. Please help improve the quality of this list by removing references you are able to determine are not relevant. Thanks, Erik.

2014

Gustavo De-Deus, Emmanuel João Nogueira Leal Silva, Juliana Marins, Erick Souza, Aline de Almeida Neves, Felipe Gonçalves Belladonna, Haimon Alves, Ricardo Tadeu Lopes, Marco Aurélio Versiani,
"Lack of Causal Relationship between Dentinal Microcracks and Root Canal Preparation with Reciprocation Systems"
Journal of Endodontics, Available online 21 April 2014
DOI: 10.1016/j.joen.2014.02.019
http://www.sciencedirect.com/science/article/pii/S0099239914001952

Suresh I. Prajapati, Lisa Nevell, Charles Keller
"Microscopic Computed Tomography-Based Skeletal Phenotyping for Genetic Model Organisms"
Mouse Molecular Embryology: Methods in Molecular Biology, Volume 1092, 2014, pp 221-226
DOI:10.1007/978-1-60327-292-6_14
http://link.springer.com/protocol/10.1007/978-1-60327-292-6_14

Valentina Giuffra, Daniele Panetta, Piero A. Salvadori and Gino Fornaciari
"A historical case of amelogenesis imperfecta: Giovanna of Austria, Grand Duchess of Tuscany (1547–1578)"
European Journal of Oral Sciences, Volume 122, Issue 1, pages 1–6, February 2014
DOI: 10.1111/eos.12097
http://onlinelibrary.wiley.com/doi/10.1111/eos.12097/full

David García Juan, Bénédicte M. A. Delattre, Sara Trombella, Sean Lynch, Matthias Becker, Hon Fai Choi, Osman Ratib
"Open framework for management and processing of multi-modality and multidimensional imaging data for analysis and modeling muscular function"
Proc. SPIE 9036, Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions, and Modeling, 90361W (March 12, 2014); doi:10.1117/12.2042853
http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=1849131

Gustavo De-Deus, Juliana Marins, Aline de Almeida Neves, Claudia Reis, Sandra Fidel, Marco A. Versiani, Haimon Alves, Ricardo Tadeu Lopes, Sidnei Paciornik.
"Assessing Accumulated Hard-tissue Debris Using Micro–computed Tomography and Free Software for Image Processing and Analysis"
Journal of Endodontics, Volume 40, Issue 2, February 2014, Pages 271–276
http://dx.doi.org/10.1016/j.joen.2013.07.025

Todd L. Bredbenner, Robert L. Mason, Lorena M. Havill, Eric S. Orwoll, Daniel P. Nicolella
"Fracture Risk Predictions Based on Statistical Shape and Density Modeling of the Proximal Femur"
Journal of Bone and Mineral Research, 2014.
DOI: 10.1002/jbmr.2241
http://onlinelibrary.wiley.com/doi/10.1002/jbmr.2241/abstract

Gregory D Scott, Emily D Blum, Allison D Fryer, and David B Jacoby
"Tissue Optical Clearing, 3D Imaging, and Computer Morphometry in Whole Mouse Lungs and Human Airways"
American Journal of Respiratory Cell and Molecular Biology
http://www.atsjournals.org/doi/abs/10.1165/rcmb.2013-0284OC#.Uz7gX1f6-5J

Sergio Vasquez, Neha Shah David Weinstein. "Methods for Evaluating Quantifying Fibrosis in Lung Tissue" United States Patent Application 20140065663, 2014.
http://www.freepatentsonline.com/20140065663.pdf

2013

Leila C. C. Bergamasco, Fátima L. S. Nunes. "Applying Distance Histogram to retrieve 3D cardiac medical models" AMIA Annual Symposium Proceedings. Published online Nov. 16, 2013.
PMCID: PMC3900133

Ling Luo, Hironori Uehara, Xiaohui Zhang, Subrata K Das, Thomas Olsen, Derick Holt, Jacquelyn M Simonis, Kyle Jackman, Nirbhai Singh, Tadashi R Miya, Wei Huang, Faisal Ahmed, Ana Bastos-Carvalho, Yun Zheng Le, Christina Mamalis, Vince A Chiodo, William W Hauswirth, Judit Baffi, Pedro M Lacal, Angela Orecchia, Napoleone Ferrara, Guangping Gao, Kim Young-hee, Yingbin Fu, Leah Owen, Romulo Albuquerque, Wolfgang Baehr, Kirk Thomas, Dean Y Li, Kakarla V Chalam, Masabumi Shibuya, Salvatore Grisanti, David J Wilson, Jayakrishna Ambati, Balamurali K Ambati
"Photoreceptor avascular privilege is shielded by soluble VEGF receptor-1"
Cell biology / Human biology and medicine, June 18, 2013.
DOI: 10.7554/eLife.00324
http://elife.elifesciences.org/content/2/e00324
 

Valentina Giuffra, Daniele Panetta, Piero A. Salvadori, Gino Fornaciari
"A historical case of amelogenesis imperfecta: Giovanna of Austria, Grand Duchess of Tuscany (1547–1578)"
DOI: 10.1111/eos.12097
http://onlinelibrary.wiley.com/doi/10.1111/eos.12097/full

Jinkoo Kim, Sanath Kumar, Chang Liu, Hualiang Zhong, Deepak Pradhan, Mira Shah, Richard Cattaneo, Raphael Yechieli, Jared R Robbins, Mohamed A Elshaikh and Indrin J Chetty
"A novel approach for establishing benchmark CBCT/CT deformable image registrations in prostate cancer radiotherapy"
Physics in Medicine and Biology Volume 58 Number 22, 2013.
doi:10.1088/0031-9155/58/22/8077
http://iopscience.iop.org/0031-9155/58/22/8077

Nicholas F. Polys, Sebastian Ullrich, Daniel Evestedt, Andrew D. Wood, Michael Aratow. "A Fresh Look at Immersive Volume Rendering: Challenges and Capabilities" 2013. http://www.andrewdwood.com/pubs/WIVI13-tmp.pdf

Jesse M. Klostranec, Tina Ehtiati, Swati Rao, Martin G. Radvany.
"Comparison of Aortic Arch and Intravenous Contrast Injection Techniques for C-arm Cone Beam CT: Implications for Cerebral Perfusion Imaging in the Angiography Suite"
Academic Radiology, Volume 20, Issue 4, April 2013, Pages 509–518
DOI: 10.1016/j.acra.2012.10.008
http://www.sciencedirect.com/science/article/pii/S1076633212005491

Mohammad Shenasa, Gerhard Hindricks, Martin Borggrefe, Günter Breithardt, Mark E. Josephson.
"Personalized Electrophysiological Modeling of the Human Atrium" Chapter 16 of Cardiac Mapping 4th Edition.
This edition first published 2013 © 1993, 2009, 2013 Blackwell Publishing Ltd.
DOI: 10.1002/9781118481585.ch16
http://onlinelibrary.wiley.com/doi/10.1002/9781118481585.ch16/summary

"Automatic Segmentation of the Left Atrium from MR Images Via Variational Region Growing with a Moments-based Shape Prior" Zhu, L. ; Gao, Y. ; Yezzi, A. ; Tannenbaum, A., Image Processing, IEEE Transactions on  (Volume:PP ,  Issue: 99 )
http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6600944&tag=1
DOI: 10.1109/TIP.2013.2282049

2012

Christoph Böcklin, Dirk Baumann, Emanuela Keller, Jürg Fröhlich.
"Determining light distribution in human head using 3D Monte Carlo simulations"
Optical Interactions with Tissue and Cells XXIII, edited by E. Duco Jansen, Robert J. Thomas,
Proc. of SPIE Vol. 8221, 822117 2012
doi: 10.1117/12.909155
http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=1344352

Rebecca A.B. Burton, Jürgen E. Schneider, Martin J. Bishop, Patrick W. Hales, Christian Bollensdorff, Matthew D. Robson, Kelvin C.K. Wong, John Morris, T. Alexander Quinn, Peter Kohl
"Microscopic magnetic resonance imaging reveals high prevalence of third coronary artery in human and rabbit heart"
Europace (2012) 14 (suppl 5): v73-v81.
doi: 10.1093/europace/eus276
http://europace.oxfordjournals.org/content/14/suppl_5/v73.short

Yu-Chi Hu, Michael D. Grossberg, Abraham Wu, Nadeem Riaz, Carmen Perez, Gig S. Mageras
Interactive semiautomatic contour delineation using statistical conditional random fields framework
Med. Phys. 39, 4547 (12 pages), 2012.
DOI: 10.1118/1.4728979
http://online.medphys.org/resource/1/mphya6/v39/i7/p4547_s1?view=fulltext

John Darrell Van Horn, Andrei Irimia, Carinna M. Torgerson, Micah C. Chambers, Ron Kikinis, Arthur W. Toga
Mapping Connectivity Damage in the Case of Phineas Gage
PLoS ONE 7(5): e37454. doi:10.1371/journal.pone.0037454
doi:10.1371/journal.pone.0037454
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0037454

Yi Gao, Ron Kikinis, Sylvain Bouix, Martha Shenton, Allen Tannenbaum
A 3D interactive multi-object segmentation tool using local robust statistics driven active contours
Medical Image Analysis, Volume 16, Issue 6, August 2012, Pages 1216–1227
DOI: 10.1016/j.media.2012.06.002
http://www.sciencedirect.com/science/article/pii/S1361841512000837

Stephen H. Gilbert, David Benoist, Alan P. Benson, Ed White, Steven F. Tanner, Arun V. Holden, Halina Dobrzynski, Olivier Bernus, Aleksandra Radjenovic.
"Visualization and quantification of whole rat heart laminar structure using high-spatial resolution contrast-enhanced MRI"
AJP - Heart January 1, 2012 vol. 302 no. 1 H287-H298
doi: 10.1152/ajpheart.00824.2011
http://ajpheart.physiology.org/content/302/1/H287.short

Gormanns P, Reckow S, Poczatek JC, Turck CW, Lechene C (2012)
Segmentation of Multi-Isotope Imaging Mass Spectrometry Data for Semi-Automatic Detection of Regions of Interest. PLoS ONE 7(2): e30576. 2012
doi:10.1371/journal.pone.0030576
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030576

Jamriska, O. and Sykora, D. and Hornung, A.
Cache-efficient graph cuts on structured grids
Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on, pp. 3673--3680
http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6248113

Manuela Kellner, Marko Heidrich, Rebecca Beigel1, Raoul-Amadeus Lorbeer, Lars Knudsen, Tammo Ripken, Alexander Heisterkamp, Heiko Meyer, Mark Philipp Kühnel, Matthias Ochs. "Imaging of the mouse lung with scanning laser optical tomography (SLOT)"
Journal of Applied Physiology, September 15, 2012 vol. 113 no. 6 975-983
DOI: 10.1152/japplphysiol.00026.2012
http://www.jappl.org/content/113/6/975.short

Feng Liu, Ph.D., Beth Erickson, M.D., Cheng Peng, Ph.D., X. Allen Li, Ph.D.
Characterization and Management of Interfractional Anatomic Changes for Pancreatic Cancer Radiotherapy
International Journal of Radiation Oncology*Biology*Physics
Volume 83, Issue 3, 1 July 2012, Pages e423–e429
DOI: 10.1016/j.ijrobp.2011.12.073
http://dx.doi.org/10.1016/j.ijrobp.2011.12.073

Vanessa Raffin-Desjardins
Étalonnage du Test de Compréhension de l'Ambiguïté sur une population de 50 à 80 ans
Mémoire pour le Certificat de capacité d'orthophoniste - 24/07/2012, Fabienne Pelage (Dir.)
http://dumas.ccsd.cnrs.fr/dumas-00730783/

Amber L. Simpson, Prashanth Dumpuri, William R. Jarnagin and Michael I. Miga
Model-Assisted Image-Guided Liver Surgery Using Sparse Intraoperative Data
Soft Tissue Biomechanical Modeling for Computer Assisted Surgery
Studies in Mechanobiology, Tissue Engineering and Biomaterials, 2012, Volume 11, 7-40, DOI: 10.1007/8415_2012_117
http://www.springerlink.com/content/nj66t5624n02348k/

Ross Taylor Sowell
"Modeling Surfaces from Volume Data Using Nonparallel Contours"
Ph.D. thesis in Computer Science at Washington University in St. Louis, 2012.
http://cse.wustl.edu/Research/Lists/Technical%20Reports/Attachments/994/Sowell.pdf

Chih-Ko Yeh, Stephen E Harris, Sumathy Mohan, Diane Horn, Roberto Fajardo, Yong-Hee Patricia Chun, James Jorgensen, Mary MacDougall and Sherry Abboud-Werner
Hyperglycemia and xerostomia are key determinants of tooth decay in type 1 diabetic mice
Laboratory Investigation (2012) 92, 868–882; doi:10.1038/labinvest.2012.60; published online 26 March 2012
doi:10.1038/labinvest.2012.60
http://www.nature.com/labinvest/journal/v92/n6/full/labinvest201260a.html

2011

Muhammad Asif
Long-term Preservation of Three Dimensional Digital Drawings and Maps
Masters Thesis, Luleå University of Technology
Department of Computer Science, Electrical and Space Engineering, December 2011
https://pure.ltu.se/ws/files/36145301/LTU-EX-2012-36139570.pdf

"Characterizing Interfraction Variations and Their Dosimetric Effects in Prostate Cancer Radiotherapy" Cheng Peng, Ph.D., Ergun Ahunbay, Ph.D., Guangpei Chen, Ph.D., Savannah Anderson, B.S., Colleen Lawton, M.D., X. Allen Li, Ph.D. In International Journal of Radiation Oncology * Biology * Physics Volume 79, Issue 3 , Pages 909-914, 1 March 2011

Brad M. Isaacson, Lucille B. Brunker, Amalia A. Brown, James P. Beck, Gregory L. Burns, Roy D. Bloebaum.
An evaluation of electrical stimulation for improving periprosthetic attachment
Journal of Biomedical Materials Research Part B: Applied Biomaterials
Volume 97B, Issue 1, pages 190–200, April 2011
http://onlinelibrary.wiley.com/doi/10.1002/jbm.b.31803/full

Fgf-18 is required for osteogenesis but not angiogenesis during long bone repair Dr. Bjorn Behr, Dr. Michael Sorkin, Miss Alina Manu, Marcus Lehnhardt, Dr. Michael Longaker and Dr. natalina quarto Tissue Engineering Part A, August 2011, 17(15-16): 2061-2069. doi:10.1089/ten.tea.2010.0719.

Stephen H. Gilbert, David Benoist, Alan P. Benson, Ed White, Steven F. Tanner, Arun V. Holden, Halina Dobrzynski, Olivier Bernus, Aleksandra Radjenovic
Visualization and quantification of whole rat heart laminar structure using high-spatial resolution contrast-enhanced MRI
Integrative Cardiovascular Physiology and Pathophysiology, Submitted 19 August 2011. Accepted 7 October 2011.
http://ajpheart.physiology.org/content/302/1/H287.short

"An evaluation of electrical stimulation for improving periprosthetic attachment" BM Isaacson, LB Brunker, AA Brown… - J Biomed Mater Res B Appl Biomater. 2011 Apr;97(1):190-200. doi: 10.1002/jbm.b.31803. Epub 2011 Feb 24. ... Publication History. ... The entire rabbit limb was carefully segmented using thresholding software and compiled into a hierarchical volume conductor model which served as the mesh for FEA (Seg3D version 1.11.0, Scientific Computing and Imaging Institute, Salt Lake City, UT ... http://onlinelibrary.wiley.com/doi/10.1002/jbm.b.31803/full

"A Volumetric Method for Quantifying Atherosclerosis in Mice by Using MicroCT: Comparison to En Face" DJ Lloyd, J Helmering, SA Kaufman, J Turk… - PloS one, 2011 - dx.plos.org ... Image Processing: Seg3D, a segmentation software package from the Scientific Computing and Imaging Institute (SCI, University of Utah, Salt Lake City, UT) was used to semi-automatically label plaques within the aortic arch. PLoS ONE 6(4): e18800. doi:10.1371/journal.pone.0018800
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0018800

Hai-Yen Nguyen,
COMPUTED TOMOGRAPHY FOR THE NON-DESTRUCTIVE IMAGING OF CULTURAL HERITAGE: X-RAY, GAMMA AND NEUTRON SOURCES,
Thesis submitted to the Department of Art in conformity with the requirements for the degree of Master of Art Conservation, Queen's University Kingston, Ontario, Canada (September, 2011)
http://qspace.library.queensu.ca/handle/1974/6713

"Contrast enhanced vessel imaging using microCT" Prajapati SI, Keller C. J Vis Exp. 2011 Jan 27;(47). pii: 2377. doi: 10.3791/2377. The reconstructed microCT data can be used for advanced isosurface, one-dimensional, or two-dimensional transfer function rendering Images using Seg3D image processing software (Seg3D, http://www.sci.utah.edu/cibc/software). ... -- http://www.jove.com/details.php?id=2377

Cheng Peng, Ph.D., Ergun Ahunbay, Ph.D., Guangpei Chen, Ph.D., Savannah Anderson, B.S., Colleen Lawton, M.D., X. Allen Li.
Characterizing Interfraction Variations and Their Dosimetric Effects in Prostate Cancer Radiotherapy
International Journal of Radiation Oncology*Biology*Physics
Volume 79, Issue 3, 1 March 2011, Pages 909–914
http://dx.doi.org/10.1016/j.ijrobp.2010.05.008

Ivo Wolf
Toolkits and Software for Developing Biomedical Image Processing and Analysis Applications
Biomedical Image Processing
Biological and Medical Physics, Biomedical Engineering, 2011, Part 8, 521-544, DOI: 10.1007/978-3-642-15816-2_21
http://www.springerlink.com/content/u540451175002p84/

Huei-Fang Yang and Yoonsuck Choe
Ground Truth Estimation by Maximizing Topological Agreements in Electron Microscopy Data
Advances in Visual Computing
Lecture Notes in Computer Science, 2011, Volume 6938/2011, 371-380, DOI: 10.1007/978-3-642-24028-7_34
http://www.springerlink.com/content/mm36n8354130227t/

Hui Zhao, Junya Azuma, Flora Kalish, Ronald J. Wong, and David K. Stevenson
Maternal Heme Oxygenase 1 Regulates Placental Vasculature Development via Angiogenic Factors in Mice
Biology of Reproduction 85(5):1005-1012. 2011
http://www.bioone.org/doi/abs/10.1095/biolreprod.111.093039

2010

"Atrial Fibrosis Helps Select the Appropriate Patient and Strategy in Catheter Ablation of Atrial Fibrillation: A DE-MRI Guided Approach" N AKOUM, M DACCARETT… - Journal of …, 2010 - Wiley Online Library ...In all images, the epicardial and endocardial LA borders were manually contoured with image display and analysis software in Seg3D (segmentation and processing ... This is in line with other publications suggesting that isolation of PV triggers may be acceptable in paroxysmal ... PubMed Article

Szczepan M. Bilinski, Mariusz K. Jaglarz, Matthew T. Dougherty, Malgorzata Kloc.
Electron microscopy, immunostaining, cytoskeleton visualization, in situ hybridization, and three-dimensional reconstruction of Xenopus oocytes
Methods, Volume 51, Issue 1, May 2010, Pages 11–19
Xenopus Oocytes as an Experimental System
http://dx.doi.org/10.1016/j.ymeth.2009.12.003

Martin J. Bishop, Gernot Plank, Rebecca A. B. Burton, Jürgen E. Schneider, David J. Gavaghan, Vicente Grau, Peter Kohl
Development of an anatomically detailed MRI-derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function
AJP - Heart February 2010 vol. 298 no. 2 H699-H718
http://ajpheart.physiology.org/content/298/2/H699.short

"Integrated approach for the study of anatomical variability in the cardiac Purkinje system: From high resolution MRI to electrophysiology simulation" Bordas, R.; Grau, V.; Burton, R.A.B.; Hales, P.; Schneider, J.E.; Gavaghan, D.; Kohl, P.; Rodriguez, B.; Comput. Lab., Oxford Univ., Oxford, UK In Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE pp. 6793 - 6796, Issue Date: Aug. 31 2010-Sept. 4 2010 PubMed ID: 21095842

Casero, R. ; Burton, R.A.B. ;  Quinn, T.A. ;  Bollensdorff, C. ;  Hales, P. ;  Schneider, J.E. ;  Kohl, P. ;  Grau, V.
Cardiac valve annulus manual segmentation using computer assisted visual feedback in three-dimensional image data
Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE
Page(s): 738 - 741, Aug. 31 2010-Sept. 4 2010
http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=5626303

"Towards High-Resolution Cardiac Atlases: Ventricular Anatomy Descriptors for a Standardized Reference Frame" Ramón Casero, Rebecca A. B. Burton, T. Alexander Quinn, Christian Bollensdorff, Patrick Hales, Jürgen E. Schneider, Peter Kohl and Vicente Grau. In Statistical Atlases and Computational Models of the Heart Lecture Notes in Computer Science, 2010, Volume 6364/2010, 75-84, DOI: 10.1007/978-3-642-15835-3_8

P. Kohl R. Casero R.A.B. Burton T.A. Quinn C. Bollensdorff P. Hales J.E. Schneider and V. Grau
Cardiac Valve Annulus Manual Segmentation Using Computer Assisted Visual Feedback in Three-Dimensional Image Data
32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'10)
pp. WeBPo10.7, 2010
http://www.cs.ox.ac.uk/publications/publication3916-abstract.html

Alan Garny, Jonathan Cooper, Peter J. Hunter
Toward a VPH/Physiome ToolKit
Wiley Interdisciplinary Reviews: Systems Biology and Medicine
Volume 2, Issue 2, pages 134–147, March/April 2010
DOI: 10.1002/wsbm.63
http://onlinelibrary.wiley.com/doi/10.1002/wsbm.63/abstract

"Evaluation of the left atrial substrate in patients with lone atrial fibrillation using delayed-enhanced MRI: implications for disease progression and response to catheter" C Mahnkopf, TJ Badger, NS Burgon, M Daccarett… - Heart Rhythm, 2010 - Elsevier This is a PDF file of an unedited manuscript that has been accepted for publication. ... In all DE-MRI images, the epicardial and endocardial LA borders were manually contoured with image display and analysis software in Seg3D (segmentation and processing tool developed by ... PubMed

Anthony F. Purchio, Ali N. Bahadur, Sergio X. Vasquez, Matthew Thomas Masner
Method and Compositions for imaging cartilage and bone
US Patent No. US 2010/0183212 A1, Jul 22, 2010.
http://www.google.com/patents?id=ZGfSAAAAEBAJ&zoom=4&dq=Seg3D&pg=PA1#v=onepage&q=Seg3D&f=false

"Image-based models of cardiac structure in health and disease" F Vadakkumpadan, H Arevalo… - Wiley …, 2010 - Wiley Online Library ... Publication History. ... In the next step, a level set method is applied to the image of the myocardium using the Seg3D software system (http://software.sci.utah.edu/SCIRun Docs/index.php/CIBC:Seg3D), to separate the larger coronary arteries and interlaminar clefts. ... -- http://www.ncbi.nlm.nih.gov/pubmed/20582162 HTML from nih.gov

"Characterizing Interfraction Variations and Their Dosimetric Effects in Prostate Cancer Radiotherapy" C Peng, E Ahunbay, G Chen, S Anderson… - International Journal of …, 2010 - Elsevier ... were copied to the daily CT scan. The planning contours and the contours on the daily CT scan (daily contours) were compared using a software tool (Seg3D, Siemens, Concord, CA). The parameters such as COM distance, volume ... -- PubMed Article

 

P. Š ovíc(ek, Š. Havránek, J. Šimek, M. Zborník, M. Mlc(ek and O. Kittnar
Isopotential ECG Imaging Correctly Identified Endocardial Ectopic Activation Site in the Case of Arrhythmia from Right Ventricular Outflow Tract
World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany
IFMBE Proceedings, 2010, Volume 25/4, 1965-1968, DOI: 10.1007/978-3-642-03882-2_522
http://www.springerlink.com/content/n462574710478j58/

Fijoy Vadakkumpadan, Hermenegild Arevalo, Anton J. Prassl, Junjie Chen, Ferdinand Kickinger, Peter Kohl, Gernot Plank, Natalia Trayanova
Image-based models of cardiac structure in health and disease
Wiley Interdisciplinary Reviews: Systems Biology and Medicine
Volume 2, Issue 4, pages 489–506, July/August 2010
DOI: 10.1002/wsbm.76
http://onlinelibrary.wiley.com/doi/10.1002/wsbm.76/abstract

2009

Martin J. Bishop, Patrick Hales, Gernot Plank, David J. Gavaghan, Jürgen Scheider and Vicente Grau
Comparison of Rule-Based and DTMRI-Derived Fibre Architecture in a Whole Rat Ventricular Computational Model
Functional Imaging and Modeling of the Heart, Lecture Notes in Computer Science, 2009, Volume 5528/2009, 87-96, DOI: 10.1007/978-3-642-01932-6_10
http://www.springerlink.com/content/m07x91314vp1q862/

Martin J. Bishop, Gernot Plank, Rebecca A. B. Burton, Jürgen E. Schneider, David J. Gavaghan, Vicente Grau, and Peter Kohl. "Development of an anatomically detailed MRI-derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function" Am J Physiol Heart Circ Physiol 298: H699-H718, 2010. First published November 20, 2009; doi:10.1152/ajpheart.00606.2009 [2]

D. Maleike, M. Nolden, H.-P. Meinzer and I. Wolf. "Interactive Segmentation Framework of the Medical Imaging Interaction Toolkit" In Computer Methods and Programs in Biomedicine, Volume 96, Issue 1, October 2009, Pages 72-83. [3]

P. Štovícek, Š. Havránek, J. Šimek, M. Zborník, M. Mlcek and O. Kittnar "Isopotential ECG Imaging Correctly Identified Endocardial Ectopic Activation Site in the Case of Arrhythmia from Right Ventricular Outflow Tract" In IFMBE Proceedings, World Congress on Medical Physics and Biomedical Engineering, September 7 - 12, 2009, Munich, Germany Vol. 25/4 Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics, Jan 1, 2010. [4]

2008

MO Bernabeu, MJ Bishop, J Pitt-Francis, DJ Gavaghan, V Grau, B Rodr´ýguez. "High Performance Computer Simulations for the Study of Biological Function in 3D Heart Models Incorporating Fibre Orientation and Realistic Geometry at Para-Cellular Resolution" In Computers in Cardiology, Vol. 35 pp. 721-724, 2008. [5]

Martin J. Bishop, Patrick Hales, Gernot Plank, David J. Gavaghan, Jürgen Scheider and Vicente Grau. "Comparison of Rule-Based and DTMRI-Derived Fibre Architecture in a Whole Rat Ventricular Computational Model" LCNS, Functional Imaging and Modeling of the Heart, Vol. 5528/2009, pp. 87--96, 2009. [6]

Christian Kurz, Matthias Straka. "Joint Image Registration and Segmentation Based on the paper by Baba Vermuri and Yunmei Chen [3]" Institute for Computer Graphics and Vision, MGVG SS 2008. ** May not be refrence to our software. [7]

2007

Philippe P. Pébay, David Thompson, Jason Shepherd, Patrick Knupp, Curtis Lisle, Vincent A. Magnotta, Nicole M. Grosland. "New Applications of the Verdict Library for Standardized Mesh Verification Pre, Post, and End-to-End Processing" In Proceedings of the 16th International Meshing Roundtable, pp. 535--552, Sept. 26, 2007. [8]

Unknown Publication status or year

"Computer Assisted Manual Segmentation With Visual Feedback of the Four Main Cardiac Valves' Annula in Rat [PDF] from ox.ac.uk R Casero, RAB Burton, TA Quinn, P Hales… - physiol.ox.ac.uk ... We propose a new Spline Tool for the open source software platform Seg3D, that is fast and improves spatial coherence by providing visual feedback of the segmentation in real time. ... Seg3D is an open source (MIT licence) software application developed in C++. ...