Outside Pubs Referencing FluoRender
This section contains citations of publications that did not include NRBC personnel but referred to the Fluo-Render software.
Last update on 8/16/2021
2021
Kristin M Scaplen, Mustafa Talay, John D Fisher, Raphael Cohn, Altar Sorkaç, Yoshi Aso, Gilad Barnea, and Karla R Kaun. Transsynaptic mapping of drosophila mushroom body output neurons. Elife, 10:e63379, 2021.
Yu Hatano, Daisuke Mashiko, Mikiko Tokoro, Tatsuma Yao, Ryota Hirao, Hiroya Kitasaka, Noritaka Fukunaga, Yoshimasa Asada, and Kazuo Yamagata. Chromosome counting in the mouse and human zygote using low-invasive super-resolution live-cell imaging. bioRxiv, 2021.
Takenobu Ogawa and Yasuki Matsumura. Revealing 3D structure of gluten in wheat dough by optical clearing imaging. Nature communications, 12(1):1.10, 2021.
Masami Nakata, Yusuke Kikuchi, Masafumi Iwami, Seika Takayanagi-Kiya, and Taketoshi Kiya. Identification and characterization of sexually dimorphic neurons that express the sex-determining gene doublesex in the brain of silkmoth bombyx mori. Insect Biochemistry and Molecular Biology, 129:103518, 2021.
Qiang Li, Yeqian Yuan, Zhi Li, and Mingjuan Ma. Collaboration awareness exploration through visual analysis of group traces. In 2021 IEEE 24th International Conference on Computer Supported Cooperative Work in Design (CSCWD), pages 121.126. IEEE, 2021.
Liyong Zhang, Delanie McEvoy, Yen Le, and Chris Ambrose. Live imaging of microtubule organization, cell expansion, and intercellular space formation in arabidopsis leaf spongy mesophyll cells. The Plant Cell, 33(3):623.641, 2021.
Olga Adamczyk, Zbigniew Baster, Maksymilian Szczypior, and Zenon Rajfur. Substrate stiffness mediates formation of novel cytoskeletal structures in fibroblasts during cell.microspheres interaction. International Journal of Molecular Sciences, 22(2):960, 2021.
Zepeng Yao and Kristin Scott. Serotonergic neurons translate taste detection into internal nutrient regulation. bioRxiv, 2021.
Xiang Hao, Edward S Allgeyer, Dong-Ryoung Lee, Jacopo Antonello, Katherine Watters, Julianne A Gerdes, Lena K Schroeder, Francesca Bottanelli, Jiaxi Zhao, Phylicia Kidd, et al. Three-dimensional adaptive optical nanoscopy for thick specimen imaging at sub-50-nm resolution. Nature Methods, pages 1.6, 2021.
Bavat Bornstein, Idan Alyagor, Victoria Berkun, Hagar Meltzer, Fabienne Reh, Hadas Keren-Shaul, Eyal David, Thomas Riemensperger, and Oren Schuldiner. Transneuronal dpr12/dip-δ interactions facilitate compartmentalized dopaminergic innervation of drosophila mushroom body axons. EMBO J. 40:e105763, 2021
Shaylina R Carter, Joshua Hislop, Joshua Hsu, Jeremy J Velazquez, and Mo R Ebrahimkhani. Neighborhood impact factor to study cell-fate decision-making in cellular communities. In Programmed Morphogenesis, pages 17.28. Springer, 2021.
Britney O Pennington, Jeffrey K Bailey, Mohamed A Faynus, Cassidy Hinman, Mitchell N Hee, Rory Ritts, Vignesh Nadar, Danhong Zhu, Debbie Mitra, Juan Carlos Martinez-Camarillo, et al. Xeno-free cryopreservation of adherent retinal pigmented epithelium yields viable and functional cells in vitro and in vivo. Scientific reports, 11(1):1.14, 2021.
2020
Sho Ohta, Young Rae Ji, Daniel Martin, and Doris K Wu. Emx2 regulates hair cell rearrangement but not positional identity within neuromasts. Elife, 9:e60432, 2020.
Robert Court, Shigehiro Namiki, J Douglas Armstrong, Jana Börner, Gwyneth Card, Marta Costa, Michael Dickinson, Carsten Duch, Wyatt Korff, Richard Mann, et al. A systematic nomenclature for the drosophila ventral nerve cord. Neuron, 107(6):1071.1079, 2020.
Keder Alyona, Tardieu Camille, Malong Liza, Filia Anastasia, Kashkenbayeva Assel, Fay Newton, Georgiades Marcos, Jonathan E Gale, Michael Lovett, Andrew P Jarman, et al. Homeostatic maintenance and age-related functional decline in the drosophila ear. Scientific Reports (Nature Publisher Group), 10(1), 2020.
Katarzyna Haraźna, Ewelina Cichoń, Szymon Skibiński, Tomasz Witko, Daria Solarz, Iwona Kwiecień, Elena Marcello, Małgorzata Zimowska, Robert Socha, Ewa Szefer, et al. Physicochemical and biological characterisation of diclofenac oligomeric poly (3-hydroxyoctanoate) hybrids as β-tcp ceramics modifiers for bone tissue regeneration. International journal of molecular sciences, 21(24):9452, 2020.
J Douglas Armstrong, John C Tuthill, Darren W Williams, and David Shepherd. A systematic nomenclature for the drosophila ventral nerve cord. 2020.
Xiang Hao, Edward S Allgeyer, Jacopo Antonello, Katherine Watters, Julianne A Gerdes, Lena K Schroeder, Francesca Bottanelli, Jiaxi Zhao, Phylicia Kidd, Mark D Lessard, et al. 3D adaptive optical nanoscopy for thick specimen imaging at sub-50 nm resolution. bioRxiv, 2020.
Kai Feng, Rajyashree Sen, Ryo Minegishi, Michael Dübbert, Till Bockemühl, Ansgar Büschges, and Barry J Dickson. Distributed control of motor circuits for backward walking in drosophila. Nature communications, 11(1):1.17, 2020.
Lukas Gegg, Marius W Buechi, Andreas Ebert, Gaudenz Deplazes, Herfried Madritsch, and Flavio S Anselmetti. Brecciation of glacially overridden palaeokarst (lower aare valley, northern switzerland): result of subglacial water-pressure peaks? Boreas, 49(4):813.827, 2020.
Stefanie Hampel, Katharina Eichler, Daichi Yamada, Hyungsoo Kim, Mihoko Horigome, Romain Franconville, Davi D Bock, Azusa Kamikouchi, and Andrew M Seeds. Convergence of distinct subpopulations of mechanosensory neurons onto a neural circuit that elicits grooming. bioRxiv, 2020.
Qingwen Zeng, Leyan Li, Zongfeng Feng, Lianghua Luo, Jianbo Xiong, Zhigang Jie, Yi Cao, and Zhengrong Li. Lcp1 is a prognostic biomarker correlated with immune infiltrates in gastric cancer. Cancer Biomarkers, (Preprint):1.21, 2020.
Tomomi Okuno, Wayne Yang Li, Yu Hatano, Atsushi Takasu, Yuko Sakamoto, Mari Yamamoto, Zenki Ikeda, Taiki Shindo, Matthias Plessner, Kohtaro Morita, et al. Zygotic nuclear f-actin safeguards embryonic development. Cell Reports, 31(13):107824, 2020.
Carlos Enrique Gutierrez, Henrik Skibbe, Ken Nakae, Hiromichi Tsukada, Jean Lienard, Akiya Watakabe, Junichi Hata, Marco Reisert, Alexander Woodward, Yoko Yamaguchi, et al. Optimization and validation of diffusion mri-based fiber tracking with neural tracer data as a reference. Scientific reports, 10(1):1.18, 2020.
Stefanie Hampel, Katharina Eichler, Daichi Yamada, Davi D Bock, Azusa Kamikouchi, and Andrew M Seeds. Distinct subpopulations of mechanosensory chordotonal organ neurons elicit grooming of the fruit fly antennae. Elife, 9:e59976, 2020.
Hyunsoo Kim, Mihoko Horigome, Yuki Ishikawa, Feng Li, J Scott Lauritzen, Gwyneth Card, Davi D Bock, and Azusa Kamikouchi. Wiring patterns from auditory sensory neurons to the escape and songrelay pathways in fruit flies. Journal of Comparative Neurology, 528(12):2068.2098, 2020.
Syara Fujii, Kazuo Kurokawa, Tatsuya Tago, Ryota Inaba, Arata Takiguchi, Akihiko Nakano, Takunori Satoh, and Akiko K Satoh. Sec71 separates golgi stacks in drosophila s2 cells. Journal of Cell Science, 133(24), 2020.
Syara Fujii, Kazuo Kurokawa, Ryota Inaba, Naoki Hiramatsu, Tatsuya Tago, Yuri Nakamura, Akihiko Nakano, Takunori Satoh, and Akiko K Satoh. Recycling endosomes attach to the trans-side of golgi stacks in drosophila and mammalian cells. Journal of cell science, 133(4), 2020.
Egidijus Auksorius, Dawid Borycki, Patrycjusz Stremplewski, Kamil Li¢«zewski, Slawomir Tomczewski, Paulina Nied¢¥zwiedziuk, Bartosz L Sikorski, and Maciej Wojtkowski. In vivo imaging of the human cornea with high-speed and high-resolution fourier-domain full-field optical coherence tomography. Biomedical Optics Express, 11(5):2849.2865, 2020.
Akankshi Munjal, Edouard Hannezo, Timothy Mitchison, and Sean Megason. Extracellular hyaluronate pressure shaped by cellular tethers drives tissue morphogenesis. bioRxiv, 2020.
Christa A Baker, Claire McKellar, Aljoscha Nern, Sven Dorkenwald, Barry J Dickson, and Mala Murthy. Neural network organization for courtship song feature detection in drosophila. bioRxiv, 2020.
Bavat Bornstein, Idan Alyagor, Victoria Berkun, Hagar Meltzer, Fabienne Reh, Hadas Keren-Shaul, Eyal David, Thomas Riemensperger, and Oren Schuldiner. Transneuronal dpr12/dip-δ interactions facilitate compartmentalized dopaminergic innervation of drosophila mushroom body axons. bioRxiv, page 834515, 2020.
Claire E McKellar, Igor Siwanowicz, Barry J Dickson, and Julie H Simpson. Controlling motor neurons of every muscle for fly proboscis reaching. Elife, 9:e54978, 2020.
Chase D Bryan, Macaulie A Casey, Rebecca L Pfeiffer, Bryan W Jones, and Kristen M Kwan. Optic cup morphogenesis requires neural crest-mediated basement membrane assembly. Development, 147(4), 2020.
Zala Eriě. Uporabniški vmesnik za načrtovanje prenosnih funkcij pri volumetričnem upodabljanju. PhD thesis, Univerza v Ljubljani, Fakulteta za računalništvo in informatiko, 2020.
Alyona Keder, Camille Tardieu, Liza Malong, Anastasia Filia, Assel Kashkenbayeva, Fay Newton, Marcos Georgiades, Jonathan E Gale, Michael Lovett, Andrew P Jarman, et al. Homeostatic maintenance and age-related functional decline in the drosophila ear. Scientific reports, 10(1):1.23, 2020.
Theodora Kontodina, Dimitrios Tzetzis, J Paulo Davim, and Panagiotis Kyratsis. 5 additive manufacturing for patient-specific medical use. Additive and Subtractive Manufacturing: Emergent Technologies, 4:199, 2020.
Xujun Han, Miaoxing Wang, Chuyan Liu, Olena Trush, Rie Takayama, Takaaki Akiyama, Toshiki Naito, Takeshi Tomomizu, Kousuke Imamura, and Makoto Sato. Dwnt4 and dwnt10 regulate morphogenesis and arrangement of columnar units via fz2/pcp signaling in the drosophila brain. Cell Reports, 33(4):108305, 2020.
Kenichi Ishii, Margot Wohl, Andre DeSouza, and Kenta Asahina. Sex-determining genes distinctly regulate courtship capability and target preference via sexually dimorphic neurons. Elife, 9:e52701, 2020.
Yonil Jung, Ann Kennedy, Hui Chiu, Farhan Mohammad, Adam Claridge-Chang, and David J Anderson. Neurons that function within an integrator to promote a persistent behavioral state in drosophila. Neuron, 105(2):322.333, 2020.
Amanda Wong, Jiajia He, Ashley Wiltsie, Victoria Krawiec, and Gillian Stanfield. Crossing two sperm chromatin-localized mcherry transgenes into a single c. elegans strain boosts signal intensity without harming sperm function. microPublication Biology, 2020.
Fengzhu Xiong, Wenzhe Ma, Bertrand Bénazéraf, L Mahadevan, and Olivier Pourquié. Mechanical coupling coordinates the co-elongation of axial and paraxial tissues in avian embryos. Developmental Cell, 55(3):354.366, 2020.
Le-Ping Yan, Irene Mencía Casta .no, Rukmani Sridharan, Domhnall Kelly, Mark Lemoine, Brenton L Cavanagh, Nicholas J Dunne, Helen O McCarthy, and Fergal J O´Brien. Collagen/gag scaffolds activated by rala-simmp-9 complexes with potential for improved diabetic foot ulcer healing. Materials Science and Engineering: C, 114:111022, 2020.
Tomasz Witko, Daria Solarz, Karolina Feliksiak, Zenon Rajfur, and Maciej Guzik. Cellular architecture and migration behavior of fibroblast cells on polyhydroxyoctanoate (pho): A natural polymer of bacterial origin. Biopolymers, 110(11):e23324, 2019.
Shu Kondo, Takahiro Takahashi, Nobuhiro Yamagata, Yasuhito Imanishi, Hidetaka Katow, Shun Hiramatsu, Katrina Lynn, Ayako Abe, Ajayrama Kumaraswamy, and Hiromu Tanimoto. Neurochemical organization of the drosophila brain visualized by endogenously tagged neurotransmitter receptors. Cell reports, 30(1):284.297, 2020.
Mai M Morimoto, Aljoscha Nern, Arthur Zhao, Edward M Rogers, Allan M Wong, Mathew D Isaacson, Davi D Bock, Gerald M Rubin, and Michael B Reiser. Connectivity establishes spatial readout of visual looming in a glomerulus lacking retinotopy. BioRxiv, 2020.
Mai M Morimoto, Aljoscha Nern, Arthur Zhao, Edward M Rogers, Allan M Wong, Mathew D Isaacson, Davi D Bock, Gerald M Rubin, and Michael B Reiser. Spatial readout of visual looming in the central brain of drosophila. Elife, 9:e57685, 2020.
Anthony J Rampello, Ethan Laudermilch, Nidhi Vishnoi, Sarah M Prophet, Lin Shao, Chenguang Zhao, C Patrick Lusk, and Christian Schlieker. Torsin atpase deficiency leads to defects in nuclear pore biogenesis and sequestration of mlf2. Journal of Cell Biology, 219(6), 2020.
Evan M Ratzan, Anne M Moon, and Michael R Deans. Fgf8 genetic labeling reveals the early specification of vestibular hair cell type in mouse utricle. Development, 147(22), 2020.
Olivia Spead and Fabienne E Poulain. Activity-dependent refinement of nasal retinal projections drives topographic map sharpening in the teleost visual system. bioRxiv, 2020.
2019
Shinji Urata, Tadatsune Iida, Masamichi Yamamoto, Yu Mizushima, Chisato Fujimoto, Yu Matsumoto, Tatsuya Yamasoba, and Shigeo Okabe. Cellular cartography of the organ of corti based on optical tissue clearing and machine learning. Elife, 8:e40946, 2019.
Anthony J Rampello, Ethan Laudermilch, Nidhi Vishnoi, Sarah M Prohet, Lin Shao, Chenguang Zhao, C Patrick Lusk, and Christian Schlieker. Torsin atpases are required to complete nuclear pore complex biogenesis in interphase. bioRxiv, page 821835, 2019.
Mario A Mendieta-Serrano, Francisco J Mendez-Cruz, Mayra Antúnez-Mojica, Denhi Schnabel, Laura Alvarez, Luis Cárdenas, Hilda Lomelí, Juan A Ruiz-Santiesteban, and Enrique Salas-Vidal. NADPH-Oxidase- derived reactive oxygen species are required for cytoskeletal organization, proper localization of E-cadherin and cell motility during zebrafish epiboly. Free Radical Biology and Medicine, 130:82.98, 2019.
Holly A Holman, Lauren A Poppi, Micah Frerck, and Richard D Rabbitt. Spontaneous and acetylcholine evoked calcium transients in the developing mouse utricle. Frontiers in cellular neuroscience, 13:186, 2019.
Mala Rajam Ananth. Functional Significance of Cortical Cholinergic Circuits in Cognitive Decline in Mouse and Human. PhD thesis, State University of New York at Stony Brook, 2019.
Yoshinori Aso, Robert P Ray, Xi Long, Daniel Bushey, Karol Cichewicz, Teri-TB Ngo, Brandi Sharp, Christina Christoforou, Amy Hu, Andrew L Lemire, et al. Nitric oxide acts as a cotransmitter in a subset of dopaminergic neurons to diversify memory dynamics. Elife, 8:e49257, 2019.
Alok Choudhary. Scalable data management, analysis, and visualization institute. Technical report, Northwestern Univ., Evanston, IL (United States), 2019.
Max C Lauring, Tianqi Zhu, Wei Luo, Wenqi Wu, Feng Yu, and Derek Toomre. New software for automated cilia detection in cells (acdc). Cilia, 8(1):1.21, 2019.
Egidijus Auksorius, Dawid Borycki, and Maciej Wojtkowski. Crosstalk-free volumetric in vivo imaging of a human retina with fourier-domain full-field optical coherence tomography. Biomedical optics express, 10(12):6390.6407, 2019.
Emily A Baumgartner, Zachary J Compton, Spencer Evans, Jacek Topczewski, and Elizabeth E LeClair. Identification of regulatory elements recapitulating early expression of l-plastin in the zebrafish enveloping layer and embryonic periderm. Gene Expression Patterns, 32:53.66, 2019.
Tine Verreet, Cory J Weaver, Hiromu Hino, Masahiko Hibi, and Fabienne E Poulain. Syntaphilin-mediated docking of mitochondria at the growth cone is dispensable for axon elongation in vivo. Eneuro, 6(5), 2019.
Eric C Wait. The Complete Interactome with 5-D GPU Accelerated Analysis, Visualization, and UI for Biological Microscopy Applications. Drexel University, 2019.
Kouji Kishimoto, Wakana Sugano-Yasunaga, Atsushi Taniguchi, Kiyokazu Agata, Shigenori Nonaka, and Noriko Funayama. Skeleton construction upon local regression of the sponge body. Development, growth & differentiation, 61(9):485.500, 2019.
Tine Verreet, Cory J Weaver, Hiromu Hino, Masahiko Hibi, and Fabienne E Poulain. Multilevel analysis in rural cancer control: A conceptual framework and methodological implications. ENEURO, 6(5), 2019.
Jennifer Schultz, James Barton Sights, and Christopher Schultz. Using laser to create finishing pattern on apparel, November 12 2019. US Patent 10,470,511.
Benjamin Schmid, Philipp Tripal, Tina Fraaß, Christina Kersten, Barbara Ruder, Anika Grüneboom, Jan Huisken, and Ralf Palmisano. 3dscript: animating 3d/4d microscopy data using a natural-languagebased syntax. Nature methods, 16(4):278.280, 2019.
Ronaldo Jose Farias Correa do Amaral, Brenton Cavanagh, Fergal Joseph O´Brien, and Cathal John Kearney. Platelet-derived growth factor stabilises vascularisation in collagen.glycosaminoglycan scaffolds in vitro. Journal of tissue engineering and regenerative medicine, 13(2):261.273, 2019.
Nicole Shepherd, Jie Lan, Wei Li, Sushmita Rane, and Qigui Yu. Primary human b cells at different differentiation and maturation stages exhibit distinct susceptibilities to vaccinia virus binding and infection. Journal of virology, 93(19):e00973.19, 2019.
Tomasz Witko, Daria Solarz, Karolina Feliksiak, Zenon Rajfur, and Maciej Guzik. Cellular architecture and migration behavior of fibroblast cells on polyhydroxyoctanoate (pho): A natural polymer of bacterial origin. Biopolymers, 110(11):e23324, 2019.
Kwan-Liu Ma. Scalable data management, analysis, and visualization (sdav) institute. Technical report, Univ. of California, Davis, CA (United States), 2019.
Michael Kunst, Eva Laurell, Nouwar Mokayes, Anna Kramer, Fumi Kubo, António M Fernandes, Dominique Förster, Marco Dal Maschio, and Herwig Baier. A cellular-resolution atlas of the larval zebrafish brain. Neuron, 103(1):21.38, 2019.
Kristen Kwan, Chase Bryan, Macaulie Casey, Rebecca L Pfeiffer, and Bryan W Jones. Migratory neural crest directs optic cup morphogenesis by depositing nidogens to build extracellular matrix superstructure. Investigative Ophthalmology & Visual Science, 60(9):6017.6017, 2019.
Michael-John Dolan, Shahar Frechter, Alexander Shakeel Bates, Chuntao Dan, Paavo Huoviala, Ruairí Jv Roberts, Philipp Schlegel, Serene Dhawan, Remy Tabano, Heather Dionne, et al. Neurogenetic dissection of the drosophila lateral horn reveals major outputs, diverse behavioural functions, and interactions with the mushroom body. Elife, 8:e43079, 2019.
Ryo Egawa and Hiromu Yawo. Analysis of neuro-neuronal synapses using embryonic chick ciliary ganglion via single-axon tracing, electrophysiology, and optogenetic techniques. Current protocols in neuroscience, 87(1):e64, 2019.
2018
Kathrin Steck, Samuel J Walker, Pavel M Itskov, Célia Baltazar, José-Maria Moreira, and Carlos Ribeiro. Internal amino acid state modulates yeast taste neurons to support protein homeostasis in drosophila. Elife, 7:e31625, 2018.
Hideo Otsuna, Masayoshi Ito, and Takashi Kawase. Color depth mip mask search: a new tool to expedite split-gal4 creation. BioRxiv, page 318006, 2018.
Felix Lucka, Nam Huynh, Marta Betcke, Edward Zhang, Paul Beard, Ben Cox, and Simon Arridge. Enhancing compressed sensing 4d photoacoustic tomography by simultaneous motion estimation. SIAM Journal on Imaging Sciences, 11(4):2224.2253, 2018.
Shengda Lin, Elisabete M Nascimento, Chandresh R Gajera, Lu Chen, Patrick Neuh¡§ ofer, Alina Garbuzov, Sui Wang, and Steven E Artandi. Distributed hepatocytes expressing telomerase repopulate the liver in homeostasis and injury. Nature, 556(7700):244.248, 2018.
Hinako Kidokoro, Sayuri Yonei-Tamura, Koji Tamura, Gary C Schoenwolf, and Yukio Saijoh. The heart tube forms and elongates through dynamic cell rearrangement coordinated with foregut extension. Development, 145(7), 2018.
Margaret J Kell, Rachel E Riccio, Emily A Baumgartner, Zachary J Compton, Paul J Pecorin, Taylor A Mitchell, Jacek Topczewski, and Elizabeth E LeClair. Targeted deletion of the zebrafish actin-bundling protein l-plastin (lcp1). PLoS One, 13(1):e0190353, 2018.
Jarosław Tokarczyk, Marek Dudek, Olga Jordá, Elkin Martinez, Andrés Peñuelas-Herráiz, and Víctor-Javier Primo-Capella. Ovomax online course as a way to improve competencies and qualifications for designing and manufacturing of custom-made orthopaedic implants. In International Conference on Applied Human Factors and Ergonomics, pages 362.374. Springer, 2018.
F Wang, K Calderone, TT Do, NR Smith, YR Helfrich, TRB Johnson, S Kang, JJ Voorhees, and GJ Fisher. Severe disruption and disorganization of dermal collagen fibrils in early striae gravidarum. British Journal of Dermatology, 178(3):749.760, 2018.
Jared L Zitnay, Shawn P Reese, Garvin Tran, Niloofar Farhang, Robert D Bowles, and Jeffrey A Weiss. Fabrication of dense anisotropic collagen scaffolds using biaxial compression. Acta biomaterialia, 65:76.87, 2018.
Darin Lanjakornsiripan, Baek-Jun Pior, Daichi Kawaguchi, Shohei Furutachi, Tomoaki Tahara, Yu Katsuyama, Yutaka Suzuki, Yugo Fukazawa, and Yukiko Gotoh. Layer-specific morphological and molecular differences in neocortical astrocytes and their dependence on neuronal layers. Nature communications, 9(1):1.15, 2018.
Tetsuhiro Kakimoto. Validation of an easily applicable three-dimensional immunohistochemical imaging method for a mouse brain using conventional confocal microscopy. Histochemistry and cell biology, 149(1):97.103, 2018.
Maximilian Georg, Tamara Fernandez-Cabada, Natalia Bourguignon, Paola Karp, Ana B Pe.naherrera, Gustavo Helguera, Betiana Lerner, Maximiliano S Pérez, and Roland Mertelsmann. Development of image analysis software for quantification of viable cells in microchips. Plos one, 13(3):e0193605, 2018.
Simon Drouin and D Louis Collins. Prism: An open source framework for the interactive design of GPU volume rendering shaders. PloS one, 13(3):e0193636, 2018.
Tanya Wolff and Gerald M Rubin. Neuroarchitecture of the drosophila central complex: A catalog of nodulus and asymmetrical body neurons and a revision of the protocerebral bridge catalog. Journal of Comparative Neurology, 526(16):2585.2611, 2018.
Jens Goldammer and Volker Dürr. Proprioceptive input to a descending pathway conveying antennal postural information: terminal organisation of antennal hair field afferents. Arthropod structure & development, 47(5):465.481, 2018.
Hannah B Gordon, Sarah Lusk, Keith R Carney, Emily O Wirick, Brooke Froelich Murray, and Kristen M Kwan. Hedgehog signaling regulates cell motility and optic fissure and stalk formation during vertebrate eye morphogenesis. Development, 145(22), 2018.
Chika Okimura, Atsushi Taniguchi, Shigenori Nonaka, and Yoshiaki Iwadate. Rotation of stress fibers as a single wheel in migrating fish keratocytes. Scientific reports, 8(1):1.10, 2018.
Tatsuya Kamimura, Toshiyuki Yamagishi, and Yuji Nakajima. Avian coronary endothelium is a mosaic of sinus venosus-and ventricle-derived endothelial cells in a region-specific manner. Development, growth & differentiation, 60(2):97.111, 2018.
Elizabeth M Sefton, Mirialys Gallardo, and Gabrielle Kardon. Developmental origin and morphogenesis of the diaphragm, an essential mammalian muscle. Developmental biology, 440(2):64.73, 2018.
Yoshitaka Oka. Anatomy and physiology of gnrh neurons and their control of pituitary function in fish. The GnRH Neuron and its Control, page 203, 2018.
Takashi Moriyama, Masakazu Toyoshima, Masakazu Saito, Hajime Wada, and Naoki Sato. Revisiting the algal "chloroplast lipid droplet": the absence of an entity that is unlikely to exist. Plant physiology, 176(2):1519.1530, 2018.
Michael-John Dolan, Ghislain Belliart-Guérin, Alexander Shakeel Bates, Shahar Frechter, Aurélie Lampin-Saint-Amaux, Yoshinori Aso, Ruairí JV Roberts, Philipp Schlegel, Allan Wong, Adnan Hammad, et al. Communication from learned to innate olfactory processing centers is required for memory retrieval in drosophila. Neuron, 100(3):651.668, 2018.
Chase D Bryan, Rebecca L Pfeiffer, Bryan W Jones, and Kristen M Kwan. Neural crest cells regulate optic cup morphogenesis by promoting extracellular matrix assembly. bioRxiv, page 374470, 2018.
Kengo Arima, Daisuke Tamaoki, Yoshinobu Mineyuki, Hiroki Yasuhara, Tomonori Nakai, Teruo Shimmen, Tohru Yoshihisa, and Seiji Sonobe. Displacement of the mitotic apparatuses by centrifugation reveals cortical actin organization during cytokinesis in cultured tobacco by-2 cells. Journal of plant research, 131(5):803.815, 2018.
Megan Addison, Qiling Xu, Jordi Cayuso, and David G Wilkinson. Cell identity switching regulated by retinoic acid signaling maintains homogeneous segments in the hindbrain. Developmental cell, 45(5):606.620, 2018.
Hiroshi Abe, Toshiki Tani, Hiromi Mashiko, Naohito Kitamura, Taku Hayami, Satoshi Watanabe, Kazuhisa Sakai, Wataru Suzuki, Hiroaki Mizukami, Akiya Watakabe, et al. "Axonal projections from the middle temporal area in the common marmoset." Frontiers in neuroanatomy, 12:89, 2018.
Célia Baroux and Veit Schubert. Technical review: microscopy and image processing tools to analyze plant chromatin: practical considerations. Plant Chromatin Dynamics, pages 537.589, 2018.
Saeed Boorboor, Shreeraj Jadhav, Mala Ananth, David Talmage, Lorna Role, and Arie Kaufman. Visualization of neuronal structures in wide-field microscopy brain images. IEEE transactions on visualization and computer graphics, 25(1):1018.1028, 2018.
Filipe Pinto-Teixeira, Clara Koo, Anthony Michael Rossi, Nathalie Neriec, Claire Bertet, Xin Li, Alberto Del-Valle-Rodriguez, and Claude Desplan. Development of concurrent retinotopic maps in the fly motion detection circuit. Cell, 173(2):485.498, 2018.
Sami H Jezzini, Amelia Merced, and Jonathan M Blagburn. Effects of gap junction misexpression on synapses between auditory sensory neurons and the giant fiber of drosophila melanogaster. BioRxiv, page 331074, 2018.
Michael-John Dolan, Shahar Frechter, Alexander Shakeel Bates, Chuntao Dan, Paavo Huoviala, Ruairí JV Roberts, Philipp Schlegel, Serene Dhawan, Remy Tabano, Heather Dionne, et al. Neurogenetic dissection of the drosophila innate olfactory processing center. BioRxiv, page 404277, 2018.
Sami H Jezzini, Amelia Merced, and Jonathan M Blagburn. Shaking-b misexpression increases the formation of gap junctions but not chemical synapses between auditory sensory neurons and the giant fiber of drosophila melanogaster. Plos one, 13(8):e0198710, 2018.
Ian A Swinburne, Kishore R Mosaliganti, Srigokul Upadhyayula, Tsung-Li Liu, David GC Hildebrand, Tony Y-C Tsai, Anzhi Chen, Ebaa Al-Obeidi, Anna K Fass, Samir Malhotra, et al. Lamellar projections in the endolymphatic sac act as a relief valve to regulate inner ear pressure. Elife, 7:e37131, 2018.
Lauren A Poppi, Hessam Tabatabaee, Hannah R Drury, Phillip Jobling, Robert J Callister, Americo A Migliaccio, Paivi M Jordan, Joseph C Holt, Richard D Rabbitt, Rebecca Lim, et al. Ach-induced hyperpolarization and decreased resistance in mammalian type ii vestibular hair cells. Journal of neurophysiology, 119(1):312.325, 2018.
Muhammad Owais Raza Siddiqui, Danmei Sun, and Ian B Butler. Geometrical modelling and thermal analysis of nonwoven fabrics. Journal of Industrial Textiles, 48(2):405.431, 2018.
2017
Kiichi Watanabe, Hui Chiu, Barret D Pfeiffer, Allan M Wong, Eric D Hoopfer, Gerald M Rubin, and David J Anderson. A circuit node that integrates convergent input from neuromodulatory and social behavior-promoting neurons to control aggression in drosophila. Neuron, 95(5):1112.1128, 2017.
Seth Winfree, Michael J Ferkowicz, Pierre C Dagher, Katherine J Kelly, Michael T Eadon, Timothy A Sutton, Troy A Markel, Mervin C Yoder, Kenneth W Dunn, and Tarek M El-Achkar. Large-scale 3-dimensional quantitative imaging of tissues: state-of-the-art and translational implications. Translational Research, 189:1.12, 2017.
Pedro Vallecillo-García, Mickael Orgeur, Sophie vom Hofe-Schneider, Jürgen Stumm, Verena Kappert, Daniel M Ibrahim, Stefan T Börno, Shinichiro Hayashi, Frédéric Relaix, Katrin Hildebrandt, et al. Odd skipped-related 1 identifies a population of embryonic fibro-adipogenic progenitors regulating myogenesis during limb development. Nature communications, 8(1):1.18, 2017.
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2016
Junko Hasegawa, Yuki Sakamoto, Satoru Nakagami, Mitsuhiro Aida, Shinichiro Sawa, and Sachihiro Matsunaga. Three-dimensional imaging of plant organs using a simple and rapid transparency technique. Plant and Cell Physiology, 57(3):462--472, 2016.
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2014
2013
Hidehiko K Inagaki, Yonil Jung, Eric D Hoopfer, Allan M Wong, Neeli Mishra, John Y Lin, Roger Y Tsien, David J Anderson
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PLoS ONE 8(3): e59179. (2013)
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2012
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Cell, Volume 148, Issue 3, 3 February 2012, Pages 583–595
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2011
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Masahiro Chatania, Yoshiro Takanob, Akira Kudoa.
"Osteoclasts in bone modeling, as revealed by in vivo imaging, are essential for organogenesis in fish"
Developmental Biology, Volume 360, Issue 1, 1 December 2011, Pages 96–109
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Maya D. Culbertson, Zachary R. Lewis, Alexei V. Nechiporuk.
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Amy H. Lim, Arminda Suli, Karina Yaniv, Brant Weinstein, Dean Y. Li, Chi-Bin Chien
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September 1, 2011 Development 138, 3847-3857.
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2010
Methods in Cell Biology, Vol. 1 - The Zebrafish: Cellular and Developmental Biology, Part A, Third Edition. 2010.
Fabienne E. Poulain, John A. Gaynes, Cornelia Stacher Horndli, Mei-Yee Law, and Chi-Bin Chien.
Ch. 1, "Analyzing Retinal Axon Guidance in Zebrafish"
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Andrew J. Pittman, John A. Gaynes, Chi-Bin Chien.
"nev (cyfip2) is required for retinal lamination and axon guidance in the zebrafish retinotectal system"
Developmental Biology, Volume 344, Issue 2, 15 August 2010, Pages 784–794
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Rainer W., Gilad A. Jacobson, Peixin Zhu.
"Circuit Neuroscience in Zebrafish"
In Current Biology, Volume 20, Issue 8, 27 April 2010, Pages R371–R381
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Unknown Year or Publication Status
(Chinese reference)
http://www.chinagene.cn/Jwk_yc/EN/article/downloadArticleFile.do?attachType=PDF&id=21028